View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9096_low_48 (Length: 212)
Name: NF9096_low_48
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 44565553 - 44565732
Alignment:
| Q |
20 |
aacaggctttctattgtgcgttataaacttctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44565553 |
aacaggctttctattgtgcgttataaacttctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacata |
44565652 |
T |
|
| Q |
120 |
taatgaaggagctgcaaggggctataattattggatcagcttttcaaactctccttggttatactggtcttatgtctctg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44565653 |
taatgaaggagctgcaaggggctataattattggatcagcttttcaaactctccttggttatactggtcttatgtctctg |
44565732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 36035216 - 36035062
Alignment:
| Q |
41 |
tataaacttctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacatataatgaaggagctgcaagggg |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
36035216 |
tataaacttctttgacggaataattggaactaaggttgctgataatgttttgatatcaattttcagaaattccgacatataatgaaggagctgcaggggg |
36035117 |
T |
|
| Q |
141 |
ctataattattggatcagcttttcaaactctccttggttatactggtcttatgtc |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
36035116 |
ctataattattggatctgcttttcaaactttccttggatatactggacttatgtc |
36035062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 20120728 - 20120827
Alignment:
| Q |
96 |
tcaattttcagaaattcaaacatataatgaaggagctgcaaggggctataattattggatcagcttttcaaactctccttggttatactggtcttatgtc |
195 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||| || ||||||||||||||||| || || |||||| |||| ||||| ||||| || |||||||| |
|
|
| T |
20120728 |
tcaatttgcagaaattcaagcatataatgagggagcttcagggggctataattattgggtccgcctttcaagctctacttggatataccggacttatgtc |
20120827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University