View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_6 (Length: 494)
Name: NF9096_low_6
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 15226581 - 15226416
Alignment:
| Q |
1 |
ttaagttgaacactctaggatcctgaagattggttggatgtctacctattattcaaccatttcactatggtcttgtttcttttgaatttaattattgtga |
100 |
Q |
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| T |
15226581 |
ttaagttgaacactctaggatcctgaagattggttggatgtctacctattattcaaccatttcacaatcgtcttgtttcttttgaatttaattattgtga |
15226482 |
T |
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| Q |
101 |
acactccggaacctttcaaatttggttgagtatgtatcaatcatccaatcattcaatgtcatgtca |
166 |
Q |
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| T |
15226481 |
acactccggaacctttcaaatttggttgagtatgtatcaatcatccaatcattcaatgtcatgtca |
15226416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 266 - 401
Target Start/End: Complemental strand, 15225816 - 15225681
Alignment:
| Q |
266 |
tataagaagatgaaagcataaacagaagtgttaaaacttatagaaaaatacaacgacatagagtgcaagtagtggtgagggtgagagtgtgataaggaga |
365 |
Q |
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| T |
15225816 |
tataagaagatgaaaacataaacagaagtgttaaaacttatagaaaaatacaacgacatagagtgcaagtaggggtgagggcgagagtgtgataaggaga |
15225717 |
T |
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| Q |
366 |
gaagtataaggcacaacgagagagaagaaatagtgt |
401 |
Q |
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| T |
15225716 |
gaagtataaggcacaacgagagagaagaaatggtgt |
15225681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 15225617 - 15225540
Alignment:
| Q |
402 |
ctttaaatttggttatcaagttcgtctagccctttaaagtcggttgtattaagctccgcattaaaaagtagatgtttt |
479 |
Q |
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| T |
15225617 |
ctttaaatttggttatcaagttcgtctagccctttaaagtcggttgtattaagctctgcgttaaaaagtagatgtttt |
15225540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 50044628 - 50044588
Alignment:
| Q |
118 |
aaatttggttgagtatgtatcaatcatccaatcattcaatg |
158 |
Q |
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| T |
50044628 |
aaatttagttgagtatgtatctatcatccaattattcaatg |
50044588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 34430416 - 34430462
Alignment:
| Q |
120 |
atttggttgagtatgtatcaatcatccaatcattcaatgtcatgtca |
166 |
Q |
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| T |
34430416 |
atttggttgagtatgtatctttcatccaatcgttcaatgtcatgtca |
34430462 |
T |
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