View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_7 (Length: 463)
Name: NF9096_low_7
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 199 - 417
Target Start/End: Complemental strand, 45073313 - 45073094
Alignment:
| Q |
199 |
taaaaagaaaggtaaatacccattcaaaagaaaatatttacattaaaagtaacacaattcattgatattttttgtatgtgtacaaatatccttaaaacat |
298 |
Q |
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| T |
45073313 |
taaaaagaaaggtaaatacccattcaaaagaaaatatttacattaaaagtaacacaattcattgatattttttgtacgtgtacaaatatccttaaaacat |
45073214 |
T |
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| Q |
299 |
taattaaaaataaacaaaaatatgtctgaatcttgcctctaaactcttgaagagaa-aaaatactgtacaaattgtagtttataaaataaatataggtat |
397 |
Q |
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| T |
45073213 |
taattaaaaataaacaaaaatatgtctgaatcttgcctctaaactcttgaagagaaaaaaatactgtacaaattgtagtttataaaataaatataggtat |
45073114 |
T |
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| Q |
398 |
tttatgtgtgcttacagaaa |
417 |
Q |
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| T |
45073113 |
tttatgtgtgcttacagaaa |
45073094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 45073719 - 45073642
Alignment:
| Q |
130 |
aatcatgcataactatttattgcataaagagaaatatgtgtaataggataatattaataaagagtatcataaaaagaa |
207 |
Q |
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| T |
45073719 |
aatcatgcataactatttattgcataaagagaaatatgtgtaataggataatattaataaagagtatcataaaaagaa |
45073642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45073851 - 45073793
Alignment:
| Q |
1 |
aaaatatacattaagctattaaaaagattgatatagtaaaattgggtttatatcaaacc |
59 |
Q |
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| T |
45073851 |
aaaatatacattaagctattaaaaagattgatatagtaaaattgggtttatatcaaacc |
45073793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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