View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9096_low_8 (Length: 458)
Name: NF9096_low_8
Description: NF9096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9096_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 315 - 436
Target Start/End: Complemental strand, 7868558 - 7868437
Alignment:
| Q |
315 |
cacacatcttgcttgtcactctcatcaatgatatctacttccaccgtcctataacccacgatactggaaaagcaatatgtctacttgcaaaatcaagttg |
414 |
Q |
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| T |
7868558 |
cacacatcttgcttgtcactctcatcaatgatatctacttccaccgtcctataacccacgatactggaaaagcaatatgtctacttgcaaaatcaagttg |
7868459 |
T |
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| Q |
415 |
catcagtccaaatgcttttccc |
436 |
Q |
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| T |
7868458 |
catcagtccaaatgcttttccc |
7868437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 7869092 - 7868979
Alignment:
| Q |
20 |
aagaagctttcgatctttgtcgagctattcattggatcagtaggttctattttgacaacataatctttgagttggctacggtgtttgatatttgatagtt |
119 |
Q |
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| T |
7869092 |
aagaagctttcgatctttgtcgagctattcattggatcggtaggttctattttaacaacataatctttgagttggctacggcg-------tttgatagtt |
7869000 |
T |
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| Q |
120 |
ttcatctgaataaaaaagaca |
140 |
Q |
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| T |
7868999 |
ttcatctaaataaaaaagaca |
7868979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 7868907 - 7868805
Alignment:
| Q |
210 |
gagttcattaggacacaatctaata--gtagttcatgagcgagttcaagcagctacatgtatgattggtgctaacccgggttatattgaacaagctattg |
307 |
Q |
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| T |
7868907 |
gagttcattaggacacaatctaatatagtaggtcatgaacgagttcaagcag----------gatcggtgctaacccgggttatattgaacaagctattg |
7868818 |
T |
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| Q |
308 |
ctaatgacacaca |
320 |
Q |
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| T |
7868817 |
ctaatgagacaca |
7868805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 7869148 - 7869098
Alignment:
| Q |
22 |
gaagctttcgatctttgtcgagctattcattggatcagtaggttctatttt |
72 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
7869148 |
gaagctttcgatctttgtcgagctattcattggattggtaggttctttttt |
7869098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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