View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_high_2 (Length: 400)
Name: NF9098_high_2
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 39413665 - 39413298
Alignment:
| Q |
13 |
agcagcacagaagcacctcttgtgattcatgatgacgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatggaa |
112 |
Q |
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| T |
39413665 |
agcagctcagaagcaccatttgtgattgatgatgatgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatgaaa |
39413566 |
T |
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| Q |
113 |
attatggtagagatggtgagctgactcaagaaacaattaatccaaagattggactttgcatggcagcactcagggcatttgttgttaagggttgacttta |
212 |
Q |
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| T |
39413565 |
gttgtggtagagatggtgagccgactcaagaaacaattaatccaaagatcggactttgtatggcagcactcagggcatttgttgttaaggattaacttta |
39413466 |
T |
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| Q |
213 |
tgatcttgtaatatgacacttatgtaccaaagaatgtgcttattttggatatgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtac |
312 |
Q |
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| T |
39413465 |
cgaccttgtaatatgacacttatgtaccaaggaatgtgcttattttgg--atgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtag |
39413368 |
T |
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| Q |
313 |
taatgcactagtaatgtgcttattttggtcatctttgtaaattatgtacttatgaaccaatgacgtgctt |
382 |
Q |
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| T |
39413367 |
taatgcactagtaatgtgcttattttggttttctttgtaaattatgtacttatgcaccaatgatgtgctt |
39413298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 42 - 303
Target Start/End: Complemental strand, 39402569 - 39402307
Alignment:
| Q |
42 |
tgatgacgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatggaaattatggtagagatggtgagctgactcaa |
141 |
Q |
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| T |
39402569 |
tgatgatgatgagatgtatgcaactgtatctgatgatggtgagatgaatgtggcagataatggagatggaaattgtggtagagatggtgagttaactcaa |
39402470 |
T |
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| Q |
142 |
gaaacaattaatccaaagattggactttgcatggcagcactcagggcatttgttgttaagggttgactttatgatcttgtaatatgacacttatgtacca |
241 |
Q |
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| T |
39402469 |
gaaataattaatccaaagattggactttgtatggcaacactcaaggcatttgttgttaaggattgactttatgatcttgtaatatgatacttatatacta |
39402370 |
T |
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| Q |
242 |
aagaatgtgcttattttggata-tgtctgtttgttaagtacttatgcaccaatgatgtgctta |
303 |
Q |
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| T |
39402369 |
aggaatgtgcttattttggatattttctgtttgttacgtacttatgcactagtaatgtgctta |
39402307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 39413355 - 39413248
Alignment:
| Q |
245 |
aatgtgcttattttggatatgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtactaatgcactagtaatgtgcttattttggtcat |
344 |
Q |
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| T |
39413355 |
aatgtgcttattttggttttctttgtaaattatgtacttatgcaccaatgatgtgcttattttggtactaatacactaataatgtgcatattttagatat |
39413256 |
T |
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| Q |
345 |
ctttgtaa |
352 |
Q |
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|||||||| |
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| T |
39413255 |
ctttgtaa |
39413248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 39402332 - 39402259
Alignment:
| Q |
309 |
gtactaatgcactagtaatgtgcttattttggtcatctttgtaaattatgtacttatgaaccaatgacgtgctt |
382 |
Q |
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| T |
39402332 |
gtacttatgcactagtaatgtgcttactatggtcatctttgtaagttatgtacttatgccccaatgatgtgctt |
39402259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 39402288 - 39402207
Alignment:
| Q |
273 |
gttaagtacttatgcaccaatgatgtgcttattttggtactaat--gcactagtaatgtgcttattttggtcatctttgtaa |
352 |
Q |
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| T |
39402288 |
gttatgtacttatgccccaatgatgtgcttattttggtactaatacacactaataatgtgcttattttagatatctttgtaa |
39402207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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