View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_high_4 (Length: 374)
Name: NF9098_high_4
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 9791278 - 9791638
Alignment:
| Q |
1 |
cctccgttacacggccagcattgcatagaatctcaaccaccttagtcacggtaacaacatcaggtacaagactcaatgcaaaacacttctcaagcaaaac |
100 |
Q |
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| T |
9791278 |
cctccgttacacggccagcattgcatagaatctcaaccaccttagtcacggtaacaacatcaggtacaagactcaatgcaaagcacttctcaagcaaaac |
9791377 |
T |
|
| Q |
101 |
aagagcttggactaaattctcttccttacaataagaagatatcaaaatattaaacgtaacctcattcgggtccaccatctcattcatcaagctcctagcc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9791378 |
aagagcttggactaaattctcttccttataataagaagatatcaaaatattaaacgtaacctcattcgggtccaccatctcattcatcaagctcctagcc |
9791477 |
T |
|
| Q |
201 |
ctaccaatttttccattcctacaaagtgcatgaagcaaagtattataaataacagtattgggtgtaaccccgttattcttaataagctgcaaaagcttaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9791478 |
ctaccaacttttccattcctacaaagtgcatgaagcaaagtattgtaaataacagtatttggtgtaaccccgttattcttaataagctgcaaaagcttaa |
9791577 |
T |
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| Q |
301 |
aaccttcaccaatcctattcgttaaacaaagtcccttcatcaaaatcccaaaagtataatc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9791578 |
aaccttcaccaatcctattcgttaaacaaagtcccttcatcaaaatcccaaaagtataatc |
9791638 |
T |
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