View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_high_6 (Length: 354)
Name: NF9098_high_6
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 67 - 336
Target Start/End: Complemental strand, 18485336 - 18485067
Alignment:
| Q |
67 |
gaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgacggaacttgcgttaccattaacctgctgaaccaccgg |
166 |
Q |
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| T |
18485336 |
gaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgacagaacttgcgttaccattaacctgctgagccaccgg |
18485237 |
T |
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| Q |
167 |
atcttccagaatagcaaactgaactgcaagctgctcagaagtagcaatggccgtaacagcagaaattttggcttgtgagtgcaggtggggtgaacatgta |
266 |
Q |
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| T |
18485236 |
atcttctagaatagcagactgaactgcgagctgctcagaagtagcaatggccgtaacagcagaaattttggcttgtgagtgcaggtggggtgaacatgta |
18485137 |
T |
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| Q |
267 |
tgcacctcagattgtgattcattgagctgggctagcgaggggctcatctccctcgagctttccaataaat |
336 |
Q |
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| T |
18485136 |
tgcacctcagattgtgattcattgagctgggcaagcgaggggctcatctctctcgagcgttcgaataaat |
18485067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 63 - 319
Target Start/End: Complemental strand, 11212934 - 11212678
Alignment:
| Q |
63 |
ttatgaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgacggaacttgcgttaccattaacctgctgaacca |
162 |
Q |
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| T |
11212934 |
ttatggactaccgcagctgccaaaaaatcagactgaaccgcgagcatgctactgccttcggacatgacagaacctgcgttaccattagcctgctgaacta |
11212835 |
T |
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| Q |
163 |
ccggatcttccagaatagcaaactgaactgcaagctgctcagaagtagcaatggccgtaacagcagaaattttggcttgtgagtgcaggtggggtgaaca |
262 |
Q |
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| T |
11212834 |
ccagagctgccagaatttcagactgaatcgcgagctactcagaagtagcaatggccgaaacagcagaaactttggcttgtgagtgcaggtggggcgaacc |
11212735 |
T |
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| Q |
263 |
tgtatgcacctcagattgtgattcattgagctgggctagcgaggggctcatctccct |
319 |
Q |
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| T |
11212734 |
tgtatgcacctcagattgagattcattgatctgggttggcgagggactcatctccct |
11212678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 18485357 - 18485313
Alignment:
| Q |
13 |
cagaacctgtgttaccatttttaactaccgcatctgccaaaaaat |
57 |
Q |
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| T |
18485357 |
cagaacctatgttaccattaagaactaccgcatctgccaaaaaat |
18485313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 63 - 315
Target Start/End: Original strand, 34215807 - 34216059
Alignment:
| Q |
63 |
ttatgaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgacggaacttgcgttaccattaacctgctgaacca |
162 |
Q |
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||||||||||| | | ||||||||||| |||||| | ||||||||||||| |||| |||||||| |||| || |||||||||||||| |||||| | |
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| T |
34215807 |
ttatgaactacagtagttgccaaaaaatctgactgaatcacgagcatgctactacctttggacatgacagaacctgtgttaccattaacctactgaacta |
34215906 |
T |
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| Q |
163 |
ccggatcttccagaatagcaaactgaactgcaagctgctcagaagtagcaatggccgtaacagcagaaattttggcttgtgagtgcaggtggggtgaaca |
262 |
Q |
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| T |
34215907 |
ccggatccgccagaatttcaaactaaaccgcgagctgtttagaagaagcaatggccgaaacaacagaaattttggcttgtgagtgcaggcggggcgaacc |
34216006 |
T |
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| Q |
263 |
tgtatgcacctcagattgtgattcattgagctgggctagcgaggggctcatct |
315 |
Q |
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| T |
34216007 |
tgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatct |
34216059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 34215737 - 34215809
Alignment:
| Q |
77 |
atctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgacggaacttgcgttaccatta |
149 |
Q |
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| T |
34215737 |
atctgccaaaaaattaggctgaaccgcgagcatgctactgccttcgaacatgacataacctgccttaccatta |
34215809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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