View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_21 (Length: 328)
Name: NF9098_low_21
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 2786231 - 2785917
Alignment:
| Q |
1 |
actgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgtatctgtcgcaccagttacgggggcacccccat |
100 |
Q |
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| T |
2786231 |
actgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgtatctgtcgcaccagttacgggggcacccccat |
2786132 |
T |
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| Q |
101 |
cttcattgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagttgagccagtgcctgtaaa |
200 |
Q |
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| T |
2786131 |
cttcattgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtcagtgtgactcctgctactgtaaaagctgagccagtgcctgtaaa |
2786032 |
T |
|
| Q |
201 |
agttgagccattgccggtaaaagttgagcgtggcgtaaaaattgagcgtggcacggcattttctggaccatcagtaattactagttcgggatatcttact |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
2786031 |
agttgagccattgccggtaaaagttgagcgtgtcgtaaaaattgagcgtggcacgacatcttctggaccgccagtaattactagttcgggatatcttact |
2785932 |
T |
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| Q |
301 |
gcttctacacaggtt |
315 |
Q |
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| T |
2785931 |
gcttctacacaggtt |
2785917 |
T |
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 22518297 - 22518378
Alignment:
| Q |
32 |
tgccttcaaatcaaattcatgttaaagttgatgatgtatctgtcgcaccagttacgggggcacccccatcttcattgccatc |
113 |
Q |
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| T |
22518297 |
tgccttcaaatcaaagtcctgtaaaagtagacgctgtatctgccacaccagttacgggggcacccccatcttcattgccatc |
22518378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 22519728 - 22519795
Alignment:
| Q |
115 |
gtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagt |
182 |
Q |
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||||||||||||||| | |||||||| ||||||||| || ||||||||||||||||||||||||||| |
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| T |
22519728 |
gtgaatggatctattccgaaccggcaaccaatacctgctgggaatgtgactcctgctactgtaaaagt |
22519795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 22520289 - 22520342
Alignment:
| Q |
262 |
tctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
315 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||| |||||||| |
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| T |
22520289 |
tctggaccgtcagtaataactagttctggatctcttactgcttctgcacaggtt |
22520342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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