View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_25 (Length: 303)
Name: NF9098_low_25
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 19292304 - 19292586
Alignment:
| Q |
7 |
cccttcttcgttcattcacctatataaatctaaaacaacataatcttcactacaaaaaatcagagccctatagagagtataatgaaatgattttgaattg |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292304 |
cccttcttcgttcattcacctata--aatctaaaacaacataatcttcactacaaacaatcagagccctatagagagtataatgaaatgattttgaattg |
19292401 |
T |
|
| Q |
107 |
tattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgatatgcttcagctatacatgtactgcacataaga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
19292402 |
tattgagaagtttcattagcctctctatttatggatagagatgaccgaatatattaaagagtattgatatgcttcagctatacatgtactgtacgtaaga |
19292501 |
T |
|
| Q |
207 |
caaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtagttat |
291 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19292502 |
caaataataaaatatacatcaatgtaaataactatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtaattat |
19292586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 19298235 - 19298512
Alignment:
| Q |
7 |
cccttcttcgttcattcacctatataaatctaaaacaacataatcttcactacaaaaaatcagagccctatagagagtataatgaaatgattttgaattg |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19298235 |
cccttcttcgttcattcacctata--aatctaaaacaacataatcttcactacaaacaatctcagccctatagagagtataatgaaatgattttgaattg |
19298332 |
T |
|
| Q |
107 |
tattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgatatgcttcagctatacatgtactgcacataaga |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||| |
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| T |
19298333 |
tattgagaagtttcattagcctctctatttatggatagagatgactgaatacattaaagagtattaatatgcttcagctatacatgt-----acctaagg |
19298427 |
T |
|
| Q |
207 |
caaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtagttat |
291 |
Q |
| |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19298428 |
caattaataaaatatacatcaatgtaaatatctatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtagttat |
19298512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 19990625 - 19990840
Alignment:
| Q |
76 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgata |
175 |
Q |
| |
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||||||| |||||||||||| ||||||||| | |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | ||| |
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|
| T |
19990625 |
atagagaatataatgaaatgtttttgaattattttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
19990724 |
T |
|
| Q |
176 |
tgcttcagctatacatgtactgcacataagacaaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgt |
275 |
Q |
| |
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| ||||| ||||||||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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| T |
19990725 |
ttcttcatctatacatgtagtgtacataagacaatgaataaaatgtacatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattat |
19990824 |
T |
|
| Q |
276 |
aatcaattgtagttat |
291 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
19990825 |
aatcaattgtagttat |
19990840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 40116709 - 40116924
Alignment:
| Q |
76 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgata |
175 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | ||| |
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|
| T |
40116709 |
atagagaatataatgaaatgtttttgaattattctgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
40116808 |
T |
|
| Q |
176 |
tgcttcagctatacatgtactgcacataagacaaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgt |
275 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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|
| T |
40116809 |
ttcttcatctatacatgtactgtacataagacaatgaataaaatgtacatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattat |
40116908 |
T |
|
| Q |
276 |
aatcaattgtagttat |
291 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
40116909 |
aatcaattgtagttat |
40116924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 40093999 - 40094214
Alignment:
| Q |
76 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgata |
175 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | ||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||| | | ||| |
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|
| T |
40093999 |
atagagaatataatgaaatgtttttgaattattctgataagttttattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
40094098 |
T |
|
| Q |
176 |
tgcttcagctatacatgtactgcacataagacaaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgt |
275 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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| T |
40094099 |
ttcttcatctatacatgtactgtacataagacaatgaataaaatgtacatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattat |
40094198 |
T |
|
| Q |
276 |
aatcaattgtagttat |
291 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
40094199 |
aatcaattgtagttat |
40094214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 76 - 291
Target Start/End: Original strand, 26103286 - 26103498
Alignment:
| Q |
76 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgaccgaatacattaaagagtattgata |
175 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | ||| |
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|
| T |
26103286 |
atagagaatataatgaaatgtttttgaattatgttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
26103385 |
T |
|
| Q |
176 |
tgcttcagctatacatgtactgcacataagacaaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataattgt |
275 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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|
| T |
26103386 |
t---tcatctatacatgtactatacataagacaatgaataaaatgtatatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattat |
26103482 |
T |
|
| Q |
276 |
aatcaattgtagttat |
291 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26103483 |
aatcaattgtagttat |
26103498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 6407834 - 6407716
Alignment:
| Q |
173 |
atatgcttcagctatacatgtactgcacataagacaaataataaaatatacatcaatgtaaataattatagtcaaacacaaaaccaaaatcttcaataat |
272 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
6407834 |
atattcttcatctatacatgtactgtacataagacaatgaataaaatgtatatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataat |
6407735 |
T |
|
| Q |
273 |
tgtaatcaattgtagttat |
291 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
6407734 |
tataatcaattgtagttat |
6407716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 6407904 - 6407844
Alignment:
| Q |
76 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctattta |
137 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
6407904 |
atagagaatataatgaaatgtttttgaattat-ttgataagtttcattagcctctctattta |
6407844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 10733672 - 10733628
Alignment:
| Q |
75 |
tatagagagtataatgaaatgattttgaattgtattgagaagttt |
119 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||||||||||| |
|
|
| T |
10733672 |
tatagagagtataaggagatgaatttgaattgtgttgagaagttt |
10733628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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