View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_28 (Length: 253)
Name: NF9098_low_28
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 2785630 - 2785878
Alignment:
| Q |
5 |
tcgagtttggtgttaaataccggctgtccttgtcttaaacctgtcaaggttccctcccaggccttaatatatttgggcggctgtgcagaagttgcctgtt |
104 |
Q |
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| T |
2785630 |
tcgagtttgctgataaataccggctgtccttgtcttaaacctgtcaaggttccctcccaggccttaatatatttgggcggctgtgcagaagttgtctgtt |
2785729 |
T |
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| Q |
105 |
gtgataagggcatattagtagcagctgcgttattcacaagcggctgcatgcctgactgtacttgttgaggcattcctggagtaggaatcatcctgggaac |
204 |
Q |
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| T |
2785730 |
gtgataagggcatattagtagcagctgcgttattcacaagtggctgcatgcctgactgtacttgttgaggcattcctggagtaggaatcattctgggaac |
2785829 |
T |
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| Q |
205 |
ctgttgtcccatgctaacagctccttgaatattagccaatggttgtgaa |
253 |
Q |
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| T |
2785830 |
ctgttgtcccatgctaacagctccttgaatattagccgatggttgtgaa |
2785878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 22520657 - 22520577
Alignment:
| Q |
115 |
catattagtagcagctgcgttattcacaagcggctgcatgcctgactgtacttgttgaggcattcctggagtaggaatcat |
195 |
Q |
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| T |
22520657 |
catattagcagcagctgcattattcacaagaggttgcatacctgattgtacctgttgaggtattcctggagtaggaatcat |
22520577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 22520463 - 22520408
Alignment:
| Q |
198 |
tgggaacctgttgtcccatgctaacagctccttgaatattagccaatggttgtgaa |
253 |
Q |
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| T |
22520463 |
tgggaacctgttgtcccatactaacacctccttggagattagctattggttgtgaa |
22520408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 22522017 - 22521982
Alignment:
| Q |
5 |
tcgagtttggtgttaaataccggctgtccttgtctt |
40 |
Q |
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| T |
22522017 |
tcgagtttggtgataaataccggctgtccttgtctt |
22521982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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