View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_29 (Length: 251)
Name: NF9098_low_29
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34055001 - 34055237
Alignment:
| Q |
1 |
ttgatgtcattataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055001 |
ttgatgtcattataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagacat |
34055100 |
T |
|
| Q |
101 |
catgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccagcatatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34055101 |
catgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaacttcctcagtcagttgaccacccttggtataaccagcatatgc |
34055200 |
T |
|
| Q |
201 |
atgaagtgaaccgatgagtttggagactgtgcttcgt |
237 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
34055201 |
atgaagtgagccgatgagtttggagactgtgcttcgt |
34055237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47382961 - 47382729
Alignment:
| Q |
1 |
ttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagac |
98 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||| |||||||| |
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| T |
47382961 |
ttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatctgttagcctcccatcttccagaatttgaagcatcatattgaagac |
47382862 |
T |
|
| Q |
99 |
atcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccagcatat |
198 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
47382861 |
atcaggatgggctttctcaatctcatcaaagagtacaacagtatagggacggcgccgaactgcctcagtcaattgaccaccctcggtataaccaacatat |
47382762 |
T |
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| Q |
199 |
gcatgaagtgaaccgatgagtttggagactgtg |
231 |
Q |
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|| || |||||||||||||||||||||||||| |
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| T |
47382761 |
ccaggaggtgaaccgatgagtttggagactgtg |
47382729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45115910 - 45115682
Alignment:
| Q |
1 |
ttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagac |
98 |
Q |
| |
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|||| ||||||||||||||||| ||||||| || ||||||| || |||||||| |||| || |||||| | ||||| ||||||||||||||||| || |
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| T |
45115910 |
ttgacgtcattataagaagtgtgttcttgaaatccacagttcggcctttactgtccgttagtcttccatcttcaaggatctgaagcatcatgttgaatac |
45115811 |
T |
|
| Q |
99 |
atcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccagcatat |
198 |
Q |
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|||| |||| |||||||| |||||||||||| ||||||||||||| ||||| || | |||||| ||||||| |||||||| | ||| |||||| ||||| |
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| T |
45115810 |
atcaggatgagctttctcgatctcatcaaagagtacaacagtgtaaggacgacgacgaactgcttcagtcaactgaccaccttcggtgtaaccaacatat |
45115711 |
T |
|
| Q |
199 |
gcatgaagtgaaccgatgagtttggagac |
227 |
Q |
| |
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|| || ||||||| || ||||||||||| |
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| T |
45115710 |
ccaggaggtgaaccaataagtttggagac |
45115682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47818056 - 47817986
Alignment:
| Q |
1 |
ttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccatct |
69 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||| |||||||||| |
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| T |
47818056 |
ttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatcagttagcctcccatct |
47817986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40245675 - 40245443
Alignment:
| Q |
1 |
ttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagac |
98 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
40245675 |
ttgatgtcattataagaagtgtgttcttgaagtccacagttcttcccttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagac |
40245576 |
T |
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| Q |
99 |
atcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccacccttggtataaccagcatat |
198 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
40245575 |
atcaggatgggctttctcaatctcatcaaagagtacaaccgtgtagggacgacgccgaactgcctcagtcagttgaccaccctcagtataaccaacatat |
40245476 |
T |
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| Q |
199 |
gcatgaagtgaaccgatgagtttggagactgtg |
231 |
Q |
| |
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| || ||||||| |||||||||||||||||| |
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| T |
40245475 |
cctggaggtgaaccaatgagtttggagactgtg |
40245443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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