View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9098_low_3 (Length: 664)

Name: NF9098_low_3
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9098_low_3
NF9098_low_3
[»] chr1 (1 HSPs)
chr1 (9-648)||(43852204-43852815)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 648
Target Start/End: Complemental strand, 43852815 - 43852204
Alignment:
Q  9 agcagagactaaattggtttgcatggtcttcaatttcaaggactaaaatattatctataaatttataaattaaattgaccaacgactacaattttaatta 108  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852815 agcaaagactaaattggtttgcatggtcttcaatttcaaggagtaaaatattatctataaatttataaattaaattgaccaacgactacaattttaatta 43852716  T
Q  109 ataataccattgtggtgactcactctatacaaatatcttcaaatttaccctaccagcctaccccaaaaacctctatctcatcccatgcatgcacagctat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  43852715 ataataccattgtggtgactcactctatacaaatatcttcaaatttaccctacc--------ccaaaaacctctatctcatcccatgcatgcacagctat 43852624  T
Q  209 ttataccaagctttctcacctctccttcaacatcaatcctcccaagtcccatgaccatctttcttttgcattcttccacaacctttgttttcattccctg 308  Q
    |||||||||||||||| |||||||||              ||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||    
T  43852623 ttataccaagctttctaacctctcct--------------cccaagtcccat------ctttcttttgcattcttccacaacctttgttttcattccttg 43852544  T
Q  309 cctttacataatgggtttaccttcatcctcattagaaacaaattggtggatgtttacacttccacccatagcacttaacaatctcctcttggtaatccta 408  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852543 cctttacataatgggtttaccgtcatcctcattagaaacaaattggtggatgtttacacttccacccatagcacttaacaatctcctcttggtaatccta 43852444  T
Q  409 cttgcactgttttccattgcatttctaaaatggacaatcccaaaaggaggtatagcttggagaaataaaagaaaccaaatgggtcaaatccctatacaag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852443 cttgcactgttttccattgcatttctaaaatggacaatcccaaaaggaggtatagcttggagaaataaaagaaaccaaatgggtcaaatccctatacaag 43852344  T
Q  509 gaccaaaaggactcccaatatttggcatgttattcaccttaaaccataacctacctcaccgtacacttgcatccatagcttcaaccctatcatccacaaa 608  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852343 gaccaaaaggactcccaatatctggcatgttattcaccttaaaccataacctacctcaccgtacacttgcatccatagcttcaaccctatcatccacaaa 43852244  T
Q  609 acaactcatggcctttagtttaggctcaaccactgcagtt 648  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  43852243 acaactcatggcctttagtttaggctcaacccctgcagtt 43852204  T

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