View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_4 (Length: 656)
Name: NF9098_low_4
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 438 - 641
Target Start/End: Complemental strand, 16376505 - 16376302
Alignment:
| Q |
438 |
gagcaatttgtagaaagtaaatgaaaggttaaacttacaaggtgagacttagcagtatgaagtaaagaggcagctcttgaagaatcagaagagttaataa |
537 |
Q |
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| T |
16376505 |
gagcaatttgtagaaagtaaatgaaaggttaaacttacaaggtgagacttagcagtatgaagtaaagaggcagctcttgaagaatcagaagagttaataa |
16376406 |
T |
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| Q |
538 |
aatgagctgctaaagtgttagctaacacacagtaattatcatgaaccactgcttccataatcacacttctctctctaccataactaagaaccttcattga |
637 |
Q |
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| T |
16376405 |
aatgagctgctaaagtgttagctaacacacagtaattatcatgaaccactgcttccataatcacacttctctctctaccataactaagaaccttcattga |
16376306 |
T |
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| Q |
638 |
aaac |
641 |
Q |
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|||| |
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| T |
16376305 |
aaac |
16376302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 16376723 - 16376589
Alignment:
| Q |
231 |
agcagaaacaaattttgcgccaaatcctcaaaactcgatcacaagtttaccaaacattgcaaatataatacgctagcttatcaacaatttgtactgagag |
330 |
Q |
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| T |
16376723 |
agcagaaacaaattttgcgccaaatcgtcaaaactccatcacaagtttaacaaacattgcaaatataatacgctagcttatcaacaatttgtactgagag |
16376624 |
T |
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| Q |
331 |
cctaaacatttcttagctttatttaattgtgaggt |
365 |
Q |
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| T |
16376623 |
cctaaacatttcttagctttatttaattgtgaggt |
16376589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 16376905 - 16376786
Alignment:
| Q |
36 |
caacatagcaaagagcgccgtatataattggaacacctaaaagaacacccatacaccccctacatcaaatacaaactctgacaaaacaaccaaagacact |
135 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16376905 |
caacatagcaaatagcgccgtatataatttgaacacctaaaa-aacacccatacaccccctacatcaaatacaaactctgacaaaacaaccaaagacact |
16376807 |
T |
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| Q |
136 |
ccccaatgagagataccaccg |
156 |
Q |
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| T |
16376806 |
ccccaatgagagataccaccg |
16376786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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