View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9098_low_5 (Length: 534)
Name: NF9098_low_5
Description: NF9098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9098_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Complemental strand, 4243746 - 4243243
Alignment:
| Q |
15 |
gacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243746 |
gacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttc |
4243647 |
T |
|
| Q |
115 |
tgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243646 |
tgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttat |
4243547 |
T |
|
| Q |
215 |
tggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243546 |
tggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatg |
4243447 |
T |
|
| Q |
315 |
atggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatttgaaatacaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243446 |
atggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatttgaaatacaa |
4243347 |
T |
|
| Q |
415 |
aatttagttatattctgttaatagtcatagatagttaatttattgattcttgacttactctttatacatacaatatttcacatactcaccttgatcatgt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243346 |
aatttagttatattctgttaatagtcatagatagttaatttattgattcttgacttactctttatacatacaatatttcacatactcaccttgatcatgt |
4243247 |
T |
|
| Q |
515 |
gatt |
518 |
Q |
| |
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|||| |
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|
| T |
4243246 |
gatt |
4243243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 27 - 404
Target Start/End: Complemental strand, 6186790 - 6186413
Alignment:
| Q |
27 |
gaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgat |
126 |
Q |
| |
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||||| ||||||||||||||||||||||| || ||||| || |||||||| |||||||||| |||||| ||||||||||| |||||||| ||| |||||| |
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| T |
6186790 |
gaaacacctttgcaaacaaggttgaataagctaacatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgat |
6186691 |
T |
|
| Q |
127 |
atttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttattggaattattgc |
226 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |
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| T |
6186690 |
atttcaccgggaatacaaagactgatgccggagttagagaattcaatggtagaaagacgagttttgatgatgtgatgaatgcaattattggaattattgc |
6186591 |
T |
|
| Q |
227 |
tgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaa |
326 |
Q |
| |
|
|||||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| || |
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| T |
6186590 |
tgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatgaa |
6186491 |
T |
|
| Q |
327 |
gcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatt |
404 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
6186490 |
gcaatggtgagaaaactctctgcatgtgagactatgggatctgctactactatttgcaccgacaaaacaggtactatt |
6186413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 400
Target Start/End: Complemental strand, 38358195 - 38358032
Alignment:
| Q |
237 |
actattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtga |
336 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| ||||| ||||||||| | || || ||||| || ||||| | ||||||||| ||||| || ||||||| |
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| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
|
| Q |
337 |
gaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtac |
400 |
Q |
| |
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| |||||||| || |||||||||||||||||||| || ||| ||||||||||| |||||||| |
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| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatcagcaacagttatctgcactgataaaacaggtac |
38358032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 39951752 - 39951669
Alignment:
| Q |
234 |
gttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatg |
317 |
Q |
| |
|
||||| || ||||| |||||| | ||||||||||||||||||||||| ||||||| || || | | ||||||||||||||||| |
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| T |
39951752 |
gttacaatcgtcgtcgttgctgttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 1610575 - 1610630
Alignment:
| Q |
342 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
397 |
Q |
| |
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|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1610575 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1610630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 1624960 - 1625015
Alignment:
| Q |
342 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
397 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1624960 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1625015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
230 |
tgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattga |
288 |
Q |
| |
|
||||||||| ||||| ||||||||| | || || |||||||| |||||||||||||||| |
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| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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