View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9099_high_3 (Length: 484)

Name: NF9099_high_3
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9099_high_3
NF9099_high_3
[»] chr1 (1 HSPs)
chr1 (19-468)||(52165084-52165533)
[»] chr4 (9 HSPs)
chr4 (255-450)||(50972653-50972850)
chr4 (338-454)||(50972413-50972529)
chr4 (134-239)||(50972654-50972759)
chr4 (141-227)||(50972520-50972607)
chr4 (134-244)||(50972413-50972523)
chr4 (351-440)||(50972517-50972607)
chr4 (52-146)||(50972769-50972863)
chr4 (341-419)||(50972336-50972414)
chr4 (134-204)||(50972341-50972411)
[»] chr7 (7 HSPs)
chr7 (272-450)||(11071907-11072088)
chr7 (349-450)||(11071763-11071863)
chr7 (134-239)||(11071908-11072013)
chr7 (164-239)||(11071764-11071839)
chr7 (52-146)||(11072023-11072118)
chr7 (349-450)||(11071617-11071719)
chr7 (164-239)||(11071618-11071695)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 52165084 - 52165533
Alignment:
Q  19 ttcttaccataaatatgcggcgtaagcttaaaatcatttcaaattcaattgtttgaccttatcatttaaatgttcttaaagcatttcaatttatcaaatt 118  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52165084 ttcttaccataaatatgcgatgtaggcttaaaatcatttcaaattcaattgtttgaccttatcatttgaatgttcttaaagcatttcaatttatcaaatt 52165183  T
Q  119 cgaccttctcactcatttgccattcatttcaaaattgaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaat 218  Q
     || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52165184 tgaacttctcactcatttgccattcatttcaaaattgaaaattctctcctcatttaaatgcaattgtttgaccttctcatttaagatcaatctcttaaat 52165283  T
Q  219 gctcctttgacacacattaaacgttcattcatttcaaattgtttgaccgtatcatttaaatgtcgttaaagcatttcaaattctcacatttgacattctc 318  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52165284 gctcctttgtcagacatgaaacgttcattcatttcaaattgtttgacggtatcatttaaatgtcgttaaagcatttcaaattctcacatttgacattctc 52165383  T
Q  319 actcctttgccatttattatgctcctttgccattcatttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52165384 actcctttgccatttattatgctcctttgccattcatttcaaatttgaaaatttcatcctcatttaaatgcaattgtttgaccttctcatttaagatgaa 52165483  T
Q  419 tctcttaaatgttcctttgccacacattaaatgttcattttccattcaca 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52165484 tctcttaaatgttcctttgccacacattaaatgttcattttccattcaca 52165533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 450
Target Start/End: Complemental strand, 50972850 - 50972653
Alignment:
Q  255 aattgtttgaccgtatcatttaaatgtcgttaaagcatttcaaattctcacatttgacattctcactcctttgccatttatta--tgctcctttgccatt 352  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||| |||| ||||  |||  ||||||||||    
T  50972850 aattgtttgaccttctcatttaaatgtccttaaagcatttcgaattctcacatttaaccttctcactcctttgtcattcattaaatgcatctttgccatt 50972751  T
Q  353 catttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatctcttaaatgttcctttgccacacattaaat 450  Q
    ||| |||||| ||||||||   ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||  |||||||||||||| |||||    
T  50972750 catatcaaatctgaaaattttctcctcatttaaatgcaattgtttgaccttcttatttaagatcaatcttttaaattatcctttgccacacaataaat 50972653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 338 - 454
Target Start/End: Complemental strand, 50972529 - 50972413
Alignment:
Q  338 tgctcctttgccattcatttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatctcttaaatgttcctttg 437  Q
    |||||||||||||||||||||||||| ||||||| | ||| |  ||||||||| |||||| |||||||| |||| ||| ||||||||||||| || ||||    
T  50972529 tgctcctttgccattcatttcaaattcgaaaatttcctccccgattaaatgcatttgtttaaccttctcgtttatgatcaatctcttaaatgctcatttg 50972430  T
Q  438 ccacacattaaatgttc 454  Q
     ||||||||||||||||    
T  50972429 gcacacattaaatgttc 50972413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 50972759 - 50972654
Alignment:
Q  134 tttgccattcatttcaaaattgaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaatgctcctttgacacac 233  Q
    |||||||||||| |||||  ||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||  ||||||| |||||    
T  50972759 tttgccattcatatcaaatctgaaaattttctcctcatttaaatgcaattgtttgaccttcttatttaagatcaatcttttaaattatcctttgccacac 50972660  T
Q  234 attaaa 239  Q
    | ||||    
T  50972659 aataaa 50972654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 50972607 - 50972520
Alignment:
Q  141 ttcatttcaaaatt-gaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaatgctcctttg 227  Q
    |||||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  50972607 ttcatttcaaaatttgaatattccctcatgatttaaatgcaattgtttgaccttctcatttaagataaatctcttaattgctcctttg 50972520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 50972523 - 50972413
Alignment:
Q  134 tttgccattcatttcaaaattgaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaatgctcctttgacacac 233  Q
    |||||||||||||||||| | ||||||| ||||| |  ||||||||| |||||  |||||||| |||| |||||||||||||||||||| |||| |||||    
T  50972523 tttgccattcatttcaaattcgaaaatttcctccccgattaaatgcatttgtttaaccttctcgtttatgatcaatctcttaaatgctcatttggcacac 50972424  T
Q  234 attaaacgttc 244  Q
    |||||| ||||    
T  50972423 attaaatgttc 50972413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 50972607 - 50972517
Alignment:
Q  351 ttcatttcaaa-tttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatctcttaaatgttcctttgcca 440  Q
    ||||||||||| |||||| ||||| || | |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||    
T  50972607 ttcatttcaaaatttgaatattccctcatgatttaaatgcaattgtttgaccttctcatttaagataaatctcttaattgctcctttgcca 50972517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 50972863 - 50972769
Alignment:
Q  52 tcatttcaaattcaattgtttgaccttatcatttaaatgttcttaaagcatttcaatttatcaaattcgaccttctcactcatttgccattcatt 146  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||||||||| | || ||| |||  |||||||||||| |||| ||||||||    
T  50972863 tcatttcaaatttaattgtttgaccttctcatttaaatgtccttaaagcatttcgaattctcacatttaaccttctcactcctttgtcattcatt 50972769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 50972414 - 50972336
Alignment:
Q  341 tcctttgccattcatttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaat 419  Q
    ||||||| ||||||||||||||||||||||||  || |||||||||  |||| |||||| |||||||||||||| ||||    
T  50972414 tcctttgtcattcatttcaaatttgaaaattctctcatcatttaaagacaatcgtttgaacttctcatttaagaggaat 50972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 50972411 - 50972341
Alignment:
Q  134 tttgccattcatttcaaaattgaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaaga 204  Q
    |||| ||||||||||||| |||||||||| ||| |||||||||  |||| ||| || ||||||||||||||    
T  50972411 tttgtcattcatttcaaatttgaaaattctctcatcatttaaagacaatcgtttgaacttctcatttaaga 50972341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 450
Target Start/End: Complemental strand, 11072088 - 11071907
Alignment:
Q  272 atttaaatgtcgttaaa-gcatttcaaattctcacatttgacattctcactcctttgccatttatta--tgctcctttgccattcatttcaaatttgaaa 368  Q
    ||||||||||| ||||| ||||||| |||||||||||||||| ||||||||| |||| |||| ||||  |||   |||||||||||| ||||||  ||||    
T  11072088 atttaaatgtccttaaaagcatttcgaattctcacatttgaccttctcactcatttgtcattcattaaatgcaattttgccattcatatcaaatccgaaa 11071989  T
Q  369 attccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatctcttaaatgttcctttgccacacattaaat 450  Q
    ||||  ||||||||||||||||||| ||| |||||||  |||||||| |||||  |||||| |||||| ||||||| |||||    
T  11071988 attctctcctcatttaaatgcaattctttaaccttcttctttaagatcaatcttctaaatgctcctttaccacacaataaat 11071907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 450
Target Start/End: Complemental strand, 11071863 - 11071763
Alignment:
Q  349 cattcatttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatctcttaaatgttcctttgccacacattaa 448  Q
    ||||||| ||||||  ||||||| | |||||||||||||||||||||||||||||||  |||||||| ||||| ||||||| || ||| ||||||| |||    
T  11071863 cattcatatcaaatacgaaaatttc-tcctcatttaaatgcaattgtttgaccttcttctttaagatcaatcttttaaatgctcatttaccacacaataa 11071765  T
Q  449 at 450  Q
    ||    
T  11071764 at 11071763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 11072013 - 11071908
Alignment:
Q  134 tttgccattcatttcaaaattgaaaattccctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaatgctcctttgacacac 233  Q
    |||||||||||| |||||   |||||||| |||||||||||||||||||| ||  |||||||  ||||||||||||||  |||||||||||||  |||||    
T  11072013 tttgccattcatatcaaatccgaaaattctctcctcatttaaatgcaattctttaaccttcttctttaagatcaatcttctaaatgctcctttaccacac 11071914  T
Q  234 attaaa 239  Q
    | ||||    
T  11071913 aataaa 11071908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 11071839 - 11071764
Alignment:
Q  164 ctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatctcttaaatgctcctttgacacacattaaa 239  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||| |||  |||||| ||||    
T  11071839 ctcctcatttaaatgcaattgtttgaccttcttctttaagatcaatcttttaaatgctcatttaccacacaataaa 11071764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 11072118 - 11072023
Alignment:
Q  52 tcatttcaaattcaattgtttgaccttatcatttaaatgttcttaaa-gcatttcaatttatcaaattcgaccttctcactcatttgccattcatt 146  Q
    |||||||||||||||||||||||  || | |||||||||| |||||| ||||||| | || ||| ||| |||||||||||||||||| ||||||||    
T  11072118 tcatttcaaattcaattgtttgaatttctaatttaaatgtccttaaaagcatttcgaattctcacatttgaccttctcactcatttgtcattcatt 11072023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 450
Target Start/End: Complemental strand, 11071719 - 11071617
Alignment:
Q  349 cattcatttcaaatttgaaaattccatcctcatttaaatgcaattgtttgaccttctcatttaagatgaatc--tcttaaatgttcctttgccacacatt 446  Q
    ||||||| ||||||  ||||||| | |||||||||||||||||||||||||||||||  |||||||| ||||  | ||||||| |||||| ||||||| |    
T  11071719 cattcatatcaaatacgaaaatttc-tcctcatttaaatgcaattgtttgaccttcttctttaagatcaatcttttttaaatgctcctttaccacacaat 11071621  T
Q  447 aaat 450  Q
    ||||    
T  11071620 aaat 11071617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 11071695 - 11071618
Alignment:
Q  164 ctcctcatttaaatgcaattgttcgaccttctcatttaagatcaatc--tcttaaatgctcctttgacacacattaaa 239  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||  | ||||||||||||||  |||||| ||||    
T  11071695 ctcctcatttaaatgcaattgtttgaccttcttctttaagatcaatcttttttaaatgctcctttaccacacaataaa 11071618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University