View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_high_5 (Length: 421)
Name: NF9099_high_5
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 28742125 - 28742196
Alignment:
| Q |
16 |
agatcaaaggcaagaaaaaacaaccaacacacggaagcagcaacaccttccaagacgaaccctatccttcga |
87 |
Q |
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| T |
28742125 |
agatcaaaggcaagaaaaaacaaccaacacacgtaagcagcaacaccttccaagacgaaccctatccttcga |
28742196 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 28742200 - 28742264
Alignment:
| Q |
191 |
attcagaacatgatctagcagcacaccaacaagccgccactaacaccgcgcatagacaatatgta |
255 |
Q |
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| T |
28742200 |
attcagaacatgatctagcaacacaccaacaagccgccactaacaccgctcatagacaatatgta |
28742264 |
T |
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