View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_high_9 (Length: 276)
Name: NF9099_high_9
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 31734430 - 31734192
Alignment:
| Q |
20 |
catgcttcatagatacagtcgacatatcatttctgaagtaaaccacattctgatcaagacattcgccagtaatatcatcatgactctcgaagtcaggtaa |
119 |
Q |
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| T |
31734430 |
catgcttcatagatacagtcgacatatcatttctgaagtaaaccacattctgatcaagacatttgccagtaatatcatcatgactctcgaagtcaggtaa |
31734331 |
T |
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| Q |
120 |
ttttaatttctagacgatatcacttagttttggtccaatctccatagagataaagtccgaggcaagcatttctatgctaaaaattctataacaaaagttt |
219 |
Q |
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| T |
31734330 |
tttt-----ctagacgatatcacttagttttggtccaatctccatagagataaagtccgaggcaagcatttctatgctaaaaattctataacaaaagttt |
31734236 |
T |
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| Q |
220 |
cttccttctgtcactctagtctagtatagttagcttcaacacca |
263 |
Q |
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| T |
31734235 |
cttccttctgtcactctagtctagtatagttagcttcaacacca |
31734192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 31746802 - 31746751
Alignment:
| Q |
188 |
tttctatgctaaaaattctataacaaaagtttcttccttctgtcactctagt |
239 |
Q |
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| T |
31746802 |
tttctatgctaaaaaatctacaacaaaagtttcttctttttgccactctagt |
31746751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 13218573 - 13218525
Alignment:
| Q |
66 |
attctgatcaagacattcgccagtaatatcatcatgactctcgaagtca |
114 |
Q |
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| T |
13218573 |
attctgataaagacgttcctcagtaatatcatcatgactttcgaagtca |
13218525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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