View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_low_11 (Length: 374)
Name: NF9099_low_11
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_low_11 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 2609475 - 2609115
Alignment:
| Q |
1 |
cctttattggttatggggttctaatttttatgttaattggtactttgttatatatatttctcatttttgtatcacatataggatttttaaggtcatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2609475 |
cctttattggttatggggttctaatttttatgttaattggtattttgttatatatatttctcatttctgtatcacatataggatttttaaggtcatttta |
2609376 |
T |
|
| Q |
101 |
aaatttccataaactcgttttcgagtcgagtctacagactcatctcgagtatgtatagacttgcaagtttgacaaccttggccaatactatcacctacaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2609375 |
aaatttccataaactcgtttacgagtcgagtctacagactcatctcgagtatgtatagacttgcaagtttgacaaccttggtcaatactatcacctacaa |
2609276 |
T |
|
| Q |
201 |
tggatcacccac-tttaccattaaaaagtatgtcatttctttctaacaaaatagatcaaatcgttgtcgtcaaccacactagatgagacaccttctcacc |
299 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| || |
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| T |
2609275 |
tggatcacccacttttaccattaaaaagtatgtcatttctttctaacaaaatagatcaaatctttatcgtcaaccacaccagatgagacaccttctcgcc |
2609176 |
T |
|
| Q |
300 |
tttcttatttctacagatagaattgaagcgaagcaaattgttgaacacttcacatccctac |
360 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
2609175 |
tttcttatttctacagatagaattgaagtgaagcaaattgtttaacacttcacatccctac |
2609115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 2577855 - 2577803
Alignment:
| Q |
309 |
tctacagatagaattgaagcgaagcaaattg-ttgaacacttcacatccctac |
360 |
Q |
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||||||||||||||||||| |||| |||||| || |||||||||||||||||| |
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| T |
2577855 |
tctacagatagaattgaagagaaggaaattgttttaacacttcacatccctac |
2577803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 14013862 - 14013755
Alignment:
| Q |
7 |
ttggttatggggttctaatttttatgttaattggtactttgttatatatatttctcatttttgtatcacatataggatttttaaggtcattttaaaattt |
106 |
Q |
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|||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |||||| ||| | |||| | | ||||||| |||||||| | ||| |
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| T |
14013862 |
ttggttatggagtttgaatttttacgttaattggtattttgttatatatatttgtcatttatgtgttacatgca-gttttttaatgtcattttttatttt |
14013764 |
T |
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| Q |
107 |
ccataaact |
115 |
Q |
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||||||||| |
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| T |
14013763 |
ccataaact |
14013755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 9842 - 9748
Alignment:
| Q |
23 |
aatttttatgttaattggtactttgttatatatatttctcatttttgtatcacatataggatttttaaggtcattttaaaatttccataaactcgt |
118 |
Q |
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|||||||||| ||||||||| ||||||| |||||||| |||||| ||| | ||||||| |||||| | |||||||| || |||||||||||||| |
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| T |
9842 |
aatttttatgctaattggtattttgttacatatatttgtcatttatgtgttacatatat-attttttatgtcatttttaatcttccataaactcgt |
9748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 28833660 - 28833614
Alignment:
| Q |
11 |
ttatggggttctaatttttatgttaattggtactttgttatatatat |
57 |
Q |
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|||||| ||| ||||||||||||||||||||| |||||||||||||| |
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| T |
28833660 |
ttatggagttttaatttttatgttaattggtattttgttatatatat |
28833614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 27647613 - 27647539
Alignment:
| Q |
23 |
aatttttatgttaattggtactttgttatatatatttctcatttttgtatcacatataggatttttaaggtcatttt |
99 |
Q |
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|||||||||||||||||||| |||||||||||||| | || ||| ||| |||| |||||| ||||||| |||||||| |
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| T |
27647613 |
aatttttatgttaattggtattttgttatatatatgt-tc-tttatgtgtcacttataggttttttaaagtcatttt |
27647539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 36658727 - 36658677
Alignment:
| Q |
7 |
ttggttatggggttctaatttttatgttaattggtactttgttatatatat |
57 |
Q |
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|||||||||| ||| ||||||||| |||||||||| |||||||||||||| |
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| T |
36658727 |
ttggttatggagtttgaatttttatattaattggtattttgttatatatat |
36658677 |
T |
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