View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_low_2 (Length: 634)
Name: NF9099_low_2
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 13 - 618
Target Start/End: Complemental strand, 18642676 - 18642071
Alignment:
| Q |
13 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
112 |
Q |
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| T |
18642676 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
18642577 |
T |
|
| Q |
113 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgnnnnnnnaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
212 |
Q |
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| T |
18642576 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgtttttttaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
18642477 |
T |
|
| Q |
213 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
312 |
Q |
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| T |
18642476 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
18642377 |
T |
|
| Q |
313 |
ttaaaaaatcttttcatacagtgcaaatatttatttggtaaccacatacttctataacaaatccaacacattatatagtgatagctatgcgtaaatctta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642376 |
ttaaaaaatcttttcatacagtgcaaatatttatttggtaaccacatacttctataacaaatccaacacattatatagtgatagctatgcgtaaatctta |
18642277 |
T |
|
| Q |
413 |
atcgagtttttgggatcacttaaccgactgtctaatatgtgtttatcctaagttttatttcaggtgctgctaaaccttttgaagctatatttgtctcatc |
512 |
Q |
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| T |
18642276 |
atcgagtttttgggatcacttaaccgactgtctaatatgtgtttatcctaagttttatttcaggtgctgctaaaccttttgaagctatatttgtctcatc |
18642177 |
T |
|
| Q |
513 |
caaaaccaagaacaaggatgcatttgatccattaattgtgatccttcatggagggccacaagacgtctcttcgtcacacttctcaaattcttgggcgttt |
612 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642176 |
caaaaccaagaacaaggatgtatttgatccattaattgtgatccttcatggagggccacaagacgtctcttcgtcacacttctcaaattcttgggcgttt |
18642077 |
T |
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| Q |
613 |
ctatct |
618 |
Q |
| |
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|||||| |
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| T |
18642076 |
ctatct |
18642071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 572
Target Start/End: Complemental strand, 18632191 - 18632088
Alignment:
| Q |
469 |
atttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgcatttgatccattaattgtgatccttcatggagggc |
568 |
Q |
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||||||||| || |||||||| |||| |||||||||| ||||| ||||||||||| | || |||| ||||||| |||||||| |||||||||| || | |
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| T |
18632191 |
atttcaggttcttgtaaaccttatgaatctatatttgtgtcatcaaaaaccaagaaaagtgacgcatgtgatccactaattgtggtccttcatgggggac |
18632092 |
T |
|
| Q |
569 |
caca |
572 |
Q |
| |
|
|||| |
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|
| T |
18632091 |
caca |
18632088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 572
Target Start/End: Original strand, 15091716 - 15091819
Alignment:
| Q |
469 |
atttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgcatttgatccattaattgtgatccttcatggagggc |
568 |
Q |
| |
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||||||||| || ||||||||||||| |||||||||| ||||| ||||||||||| | || |||| ||||||| |||||||| |||||||||| || | |
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| T |
15091716 |
atttcaggttcttgtaaaccttttgaatctatatttgtgtcatcaaaaaccaagaaaagcgacgcatgtgatccactaattgtggtccttcatgggggac |
15091815 |
T |
|
| Q |
569 |
caca |
572 |
Q |
| |
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|||| |
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| T |
15091816 |
caca |
15091819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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