View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_low_20 (Length: 271)
Name: NF9099_low_20
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 5477730 - 5477495
Alignment:
| Q |
18 |
atttttaaattaatttgttagttttcaaattcataatacttattaccgtgaattcgaaacctttgtcaaaatcaacaaaaacaaagatgtggagcaaata |
117 |
Q |
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| T |
5477730 |
atttttaaattaatttgttagttttcaaattcataatact-attgccttgaattcgaaacctttgtcaaaatcaacaaaaacaaagatgtggagcaaata |
5477632 |
T |
|
| Q |
118 |
atattgacaatcaacaacaaaatagttcaagcaaccatattcaatcaggaacaaatttaacaacatgtatgtataacaaattcacagtcaaaccaaagaa |
217 |
Q |
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| T |
5477631 |
atactgacaatcaacaacaaaatagttcaagcaacaatattcaatcatgaacaaattt---aacatgtatgtataacaaattcacagtcaaaccaaagaa |
5477535 |
T |
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| Q |
218 |
caaagatattacaatagagaaacaaacacgccagtattat |
257 |
Q |
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| T |
5477534 |
caaagatactacaatagagaaacaaacacaccaatattat |
5477495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 10274382 - 10274542
Alignment:
| Q |
65 |
gtgaattcgaaacctttgtcaaaatcaacaaaaacaaagatgtggagcaaataatattgacaatcaacaacaaaatagttcaagcaaccatattcaatca |
164 |
Q |
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| T |
10274382 |
gtgaattcaaaccctttgtcaaaaccaacaagataaaaaatgtgaagcaaataacaatggcaaccaacaaccaaacagtccaagcaacaatattcaacct |
10274481 |
T |
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| Q |
165 |
ggaacaaatttaacaacatgtatgtataacaaattcacagtcaaaccaaagaacaaagata |
225 |
Q |
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| T |
10274482 |
agaacaaatctagcaacctatgtgtatagaaaaaccacaatcaaaccaaagaacaaagata |
10274542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 27997261 - 27997228
Alignment:
| Q |
77 |
cctttgtcaaaatcaacaaaaacaaagatgtgga |
110 |
Q |
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| T |
27997261 |
cctttgtcaaaatcaacaaaaacaaagatgtgga |
27997228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 42685361 - 42685307
Alignment:
| Q |
97 |
aacaaagatgtggagcaaataatattgacaatcaacaacaaaatagttcaagcaac |
152 |
Q |
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| T |
42685361 |
aacaaagatgtggagcaaataacaatgacaaccaacaac-aaacagttcaagcaac |
42685307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 25781388 - 25781336
Alignment:
| Q |
65 |
gtgaattcgaaacctttgtcaaaatcaacaaaaacaaagatgtggagcaaata |
117 |
Q |
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| T |
25781388 |
gtgaattcgaactctttgtcaaaaccaacaagaataaagatgtagagcaaata |
25781336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 6687487 - 6687449
Alignment:
| Q |
79 |
tttgtcaaaatcaacaaaaacaaagatgtggagcaaata |
117 |
Q |
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| T |
6687487 |
tttgtcaaaatcaacaagaacaaagatgtggatcaaata |
6687449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 35214586 - 35214554
Alignment:
| Q |
76 |
acctttgtcaaaatcaacaaaaacaaagatgtg |
108 |
Q |
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| T |
35214586 |
acctttgtcaaaaccaacaaaaacaaagatgtg |
35214554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 28607748 - 28607836
Alignment:
| Q |
138 |
aatagttcaagcaaccatattcaatcaggaacaaatttaacaacatgtatgtataacaaattcacagtca-aaccaaagaacaaagata |
225 |
Q |
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|||||| |||| ||| |||||||||| |||||||| || |||||| | ||||||||||| |||| ||| ||||||||||||||||| |
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| T |
28607748 |
aatagtccaagaaacaatattcaatctagaacaaatatagcaacatatgcgtataacaaatccacaatcatgaccaaagaacaaagata |
28607836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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