View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_low_4 (Length: 499)
Name: NF9099_low_4
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 43311401 - 43310935
Alignment:
| Q |
18 |
tgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaattatgttact |
117 |
Q |
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| T |
43311401 |
tgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaattatgttact |
43311302 |
T |
|
| Q |
118 |
gaccacatacaaaatggttggagggtattagtcattagtcaaattactacataaatcaactcaacttgatttcacttcgttgaaatgaggaaatgcgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43311301 |
gaccacatacaaaatggttggagggtattagtca-------aattactacataaatcaactcaacttgatttcacttcgttgaaatgaggaaatgcgttt |
43311209 |
T |
|
| Q |
218 |
tagaaagttttgtccaaaagtttacaattgtgttttgacatgtaactgatatagttctgcactttaactgaaatacactattcagtttagtaaagtcaaa |
317 |
Q |
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| T |
43311208 |
tagaaagttttgtccaaaagtttacaattgtgttttgacaggtaactgatatagttctgcactttaactgaaatacactattcagtttagtaaagtcaaa |
43311109 |
T |
|
| Q |
318 |
ttcataaaaactatatgaatgtggatcaaaattacatggcagtcattcacatttttgctattattgaactgatgaattaaaagtagattgcatctgattg |
417 |
Q |
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| T |
43311108 |
ttcataaaaactatatgaatgtggatcaaaattacatggcagtcattcacatttttgctattattgaactgataaattaaaagtagattgcatctgattg |
43311009 |
T |
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| Q |
418 |
taattgtaacattttaatgtaatagaaaaataatactgttaaatagagttatatagttttctcacacaggttct |
491 |
Q |
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| T |
43311008 |
taattgtaacattttaatgtaatagaaaaataatactgttgaatagagttatatagttttctcacacagattct |
43310935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 39484575 - 39484659
Alignment:
| Q |
26 |
gtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
110 |
Q |
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| T |
39484575 |
gtaggaagactttgttagagggtggatcttcctacacttatttaggtcatctgattgattatattatgaatcaggtatcaaatta |
39484659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 39487779 - 39487859
Alignment:
| Q |
30 |
gaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
110 |
Q |
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| T |
39487779 |
gaagactttgttagagggtggatcttcctacacttatttaggtcatttgattgattatattatgaatcaggtatcaaatta |
39487859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39463416 - 39463354
Alignment:
| Q |
30 |
gaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattat |
92 |
Q |
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| T |
39463416 |
gaagactttgttagagggaggatcttcctacacttatttaggtcgtttgattgattatattat |
39463354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 39476826 - 39476906
Alignment:
| Q |
30 |
gaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
110 |
Q |
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| T |
39476826 |
gaagactttgttagaaggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
39476906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 39455942 - 39456022
Alignment:
| Q |
30 |
gaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
110 |
Q |
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| T |
39455942 |
gaagactttgttagagggaggatcttcttccacttatttaggtcgtttaattgattatattatgaaccaggtatcaaatta |
39456022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 39473344 - 39473420
Alignment:
| Q |
30 |
gaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaa |
106 |
Q |
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| T |
39473344 |
gaagactttgttagaaggtggatcttcttacgcatatttaggtcgattggttgattatattatgaatcaggtatgaa |
39473420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 39457146 - 39457093
Alignment:
| Q |
38 |
tgttagagggtggatcttcctacacttgcttaggtagtttgattgattatatta |
91 |
Q |
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| T |
39457146 |
tgttagatggaggatcttcctacacttatttaggtcgtttgatcgattatatta |
39457093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 39452322 - 39452394
Alignment:
| Q |
38 |
tgttagagggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
110 |
Q |
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| T |
39452322 |
tgttagaaggaggatcttcctccatttatttaagtcgtttaattgattatattatgaaccaggtatgaaatta |
39452394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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