View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9099_low_7 (Length: 424)
Name: NF9099_low_7
Description: NF9099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9099_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 34383755 - 34384153
Alignment:
| Q |
15 |
aatatttcagagtcaatatgaagctactagactcatcaacattgtcagacatgaaatgtttagaaaagtaattatattacatggaacatgtcccagtctg |
114 |
Q |
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| T |
34383755 |
aatatttcacagtcaatatgaagctactagactcatcaacattttcagacatgaaatgtttagaaaagtaattatattacttggaacatgtcccagtctg |
34383854 |
T |
|
| Q |
115 |
gcacaaaaatctctcccagaagaagactgttaaaagctaccgacgcaacatgtaaggtttgaaatgttggttcccttggcatgaaatcctcagatgctct |
214 |
Q |
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| T |
34383855 |
gcacaaatatctctcccagaagaagactgttaaaagctaccgacgcaacatgtaaggtttgaaatgttggttcccttggcatgaaatcctcagatgctct |
34383954 |
T |
|
| Q |
215 |
tgctgctgcactcttctttgaactaacaattgagagtaatgaaaaaaggatgaatcgtcagaaaaaggaatatgaagaaaatttaagattctattagctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34383955 |
tgctgctgcactcttctttgaactaacaattgagagtaatgaaaaaaggatgactcgtcagaaaaaggaatatgaagaaaatttaagattctattagctt |
34384054 |
T |
|
| Q |
315 |
aacactagcgaggatgtaaacctgtaaattgaatcagagttgtgacacatgcaacaaatgaggttattgtgctcaaagttccttgctattgatgtctct |
413 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34384055 |
aacactagtgaggatgtaaacctgtaaattgaatcagagttgtgacacatgcaacaaatgaggttattgtgctcaaagttccttgctattgatgtctct |
34384153 |
T |
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