View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9100_low_3 (Length: 584)
Name: NF9100_low_3
Description: NF9100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9100_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 40187865 - 40187442
Alignment:
| Q |
13 |
gcagagaccacattcttgtatagtggatgcaacaagtccctctcaatatttattggtcatgctaggtgtgcacattgcaaagcacaaaaatgtaacataa |
112 |
Q |
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| T |
40187865 |
gcagagaccacattcttgtatagtggatgcaacaagtccctctcaatatttattggtcatgctaggtgtgcacattgcaaagcacaaaaatgtaacataa |
40187766 |
T |
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| Q |
113 |
aattcatttattgtagtgaaacttgctattctattttgtttgattggttgcttttcttacaatttgtgtggtgataacacaatcactacacttgtaaggt |
212 |
Q |
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| T |
40187765 |
aattcatttattgtagtgaaacttgctattctattttgtttgattggttgcttttcttacaatttgtgtggtgataacacaatcactacacttgtaaggt |
40187666 |
T |
|
| Q |
213 |
aaggtaaaggaattttattaataaataagtgttccaaacaatatcacatcttctacgaaaggttgcaaatgcgtctatactatcatgtgttaaacaacca |
312 |
Q |
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| T |
40187665 |
aaggtaaaggaattttattaataaataagtgttcgaaacaatatcacatcttctacgaaaggttgcaaatgcgtctatactatcatgtgttaaacaacca |
40187566 |
T |
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| Q |
313 |
gacaatttacaattacaagtacgagagttctaaataccccaactagagacacgatgcatgtgctagactgtcgggcaaccagaccatcgaccatttataa |
412 |
Q |
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| T |
40187565 |
gacaatttacaattacaagtacgagagttctaaataccccaactagagacacgatgcatgtgctagactgtcgggcaaccagaccatcgaccatttataa |
40187466 |
T |
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| Q |
413 |
acacattatcatacgtgtcgcagc |
436 |
Q |
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| T |
40187465 |
acacattatcatacgtgtcgcagc |
40187442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 436 - 565
Target Start/End: Complemental strand, 40187383 - 40187254
Alignment:
| Q |
436 |
cttgtcaaagtaattttaacaaaaattactgagatttttcacttgtaaatattcacggggcatagacaaaatccttcatccatctagctcctttcagtca |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40187383 |
cttgtcaaagtaattttaacaaaaattactgagatttttcacttgtaaatattcacggggcatagacaaaatccttcatccatctagctcccttcagtca |
40187284 |
T |
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| Q |
536 |
cttcaaaaacagttcgtagatactgctctg |
565 |
Q |
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| T |
40187283 |
cttcaaaaacagttcgtagatactgctctg |
40187254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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