View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9101_low_1 (Length: 701)
Name: NF9101_low_1
Description: NF9101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9101_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 5 - 683
Target Start/End: Complemental strand, 1704402 - 1703724
Alignment:
| Q |
5 |
tctatatatacacatagacacacacaatgcacctatctctccaactacatgtgagttgagaaaatatatagcatcaatggcaatcaaacaccaaggaaac |
104 |
Q |
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| T |
1704402 |
tctatatatacacatagacacacacaatgcacctatctctccaactacatgtgagttgagaaaatatatagcatcaatggcaatcaaacaccaaggaaac |
1704303 |
T |
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| Q |
105 |
aattccctcttgaaacattgttgttcatcaaggcgtgtaataaccttgatacaaaaggtaactgcagaagttattggtacatattttctagtgtttgctg |
204 |
Q |
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| T |
1704302 |
aattccctcttgaaacattgttgttcatcaaggcgtgtaataaccttgatacaaaaggtaactgcagaagttattggtacatattttctagtgtttgctg |
1704203 |
T |
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| Q |
205 |
gttgtggtgctgtagcagtaaacaaaatacatggctctatcacttttccagggatttgtatcacttggggattgattgtaacagtcatgtgttactcagt |
304 |
Q |
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| T |
1704202 |
ggtgtggtgctgtagcagtaaacaagatccatggctctatcacttttccagggatttgcatcacttgggggttgattgtaacagtcatgtgttactcagt |
1704103 |
T |
|
| Q |
305 |
tggtcatatctctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattcttgct |
404 |
Q |
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| T |
1704102 |
tggtcatatctctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattcttgct |
1704003 |
T |
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| Q |
405 |
caattacttggttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcttatttcggaactgtaccggtcggatcaaactgtc |
504 |
Q |
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| T |
1704002 |
caattacttggttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcatatttcggaactgtaccggtcggatcaaactgtc |
1703903 |
T |
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| Q |
505 |
aatctttagtgttagaaatcattatcagttttctcttaatgtttgtcatttcagctgttactacagatgatagagcggtcgatgactccgcaagtattgc |
604 |
Q |
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| T |
1703902 |
aatctttagtgttagaaatcattatcagttttctcttaatgtttgtcatttcagctgttactacagatgatagagcggtcgatgactcggcaagtattgc |
1703803 |
T |
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| Q |
605 |
agttggaatgacattaacattgaatctttttattgctgggcctgtatcaggtgcatctatgaacccagcaagaagtatt |
683 |
Q |
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| T |
1703802 |
ggttggaatgacattaacattgaatctttttattgctgggcctgtgtcaggtgcatctatgaacccagcaagaagtatt |
1703724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 167 - 349
Target Start/End: Original strand, 34019045 - 34019227
Alignment:
| Q |
167 |
tgcagaagttattggtacatattttctagtgtttgctggttgtggtgctgtagcagtaaacaaaatacatggctctatcacttttccagggatttgtatc |
266 |
Q |
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| T |
34019045 |
tgcagaaatcattgggacatattttgtggtgtttgctggatgtgggtctgtagcagtggacaagatctatgggtctgtcacatttccaggggtatgtatc |
34019144 |
T |
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| Q |
267 |
acttggggattgattgtaacagtcatgtgttactcagttggtcatatctctggaggcctcttcaaccctgctgttaccatcac |
349 |
Q |
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| T |
34019145 |
acttgggggcttattgtaatggtcatgtcttactctgttggtcatatctctggaggacatttcaaccctgctgttaccatcac |
34019227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 559
Target Start/End: Original strand, 34019487 - 34019577
Alignment:
| Q |
469 |
cttatttcggaactgtaccggtcggatcaaactgtcaatctttagtgttagaaatcattatcagttttctcttaatgtttgtcatttcagc |
559 |
Q |
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| T |
34019487 |
cttattttggaaccgtaccagttggatcaaatggccagtctttagttgtagaaatcatcatcagttttctcttaatgtttgtcatttcagc |
34019577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 683
Target Start/End: Original strand, 34019862 - 34019902
Alignment:
| Q |
643 |
ggcctgtatcaggtgcatctatgaacccagcaagaagtatt |
683 |
Q |
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| T |
34019862 |
ggcctgtatcaggaggatctatgaacccagcaagaagtatt |
34019902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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