View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9101_low_3 (Length: 398)
Name: NF9101_low_3
Description: NF9101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9101_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 46537100 - 46536732
Alignment:
| Q |
20 |
aaaatgagatcgagaagactattaatcactctacatccattccaaaggcgaagtctcttacttctttgcttatgttatagaatctgttttgtttgacaag |
119 |
Q |
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| T |
46537100 |
aaaatgagatcgagaagactattaatcactctacatccattccaaaggcaaagtctcttacttctttgcttatgttatagaatctgttttgtttgacaag |
46537001 |
T |
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| Q |
120 |
ttaatttctatttatttgcaaatttgatatattatatgttttcaacttagattttgacgacacctaattcatttttcagtttagattttgttaagaaatc |
219 |
Q |
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| T |
46537000 |
ttaatttctatttatttgcaaatttgatatattatacgttttcaacttagattttgacgacacctaattcatttttcagtttagattttgttaagaaatc |
46536901 |
T |
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| Q |
220 |
aaatcaactcagttataaagtcttcactcatgaggttgatccgccgatgcagtggtaaggagagccagaacctaacagtggcttactcatgaaagttacg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46536900 |
aaatcaactcagttataaagtcttcactcatgaggttgatccgtcgatgcagtggtaaggagagccagaacctaacagtggctcactcatgaaagttacg |
46536801 |
T |
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| Q |
320 |
cctggttttccttgtcgacgtacaaggttttaatttataaattttagcccatttgaattctctgcttct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46536800 |
cctggttttccttgtcgacgtacaaggttttaatttataaattttagcccatttgaattctctggttct |
46536732 |
T |
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