View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9101_low_4 (Length: 378)
Name: NF9101_low_4
Description: NF9101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9101_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 55175383 - 55175745
Alignment:
| Q |
1 |
attgttcctaaagagattaattcagaaaagccattgataaattggatgagaatggatgaaagccaaaatttgcattttgaaaaacttaacgactgtgact |
100 |
Q |
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| T |
55175383 |
attgttcctaaagagattaattcagaaaagccattgataaattggatgagaatggatgaaagccaaaatttgcattttgaaaaacttaacgactgtgact |
55175482 |
T |
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| Q |
101 |
ctgttgcagatttaaatgaaacaaaaagtggtgat-gcatgcaatggtaattattttgatgaattggataacaatcagatacaagaggaaattaatgaca |
199 |
Q |
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| T |
55175483 |
ctgttgcagatttcaatgaaacaaaaagtggtgacagcatgcaatggtaattattttgatgaattggataacaatcagatacaagaggaaattaatgaca |
55175582 |
T |
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| Q |
200 |
tagttgaaactgttagctcgcaaaaaggttaccttgctgatcatattgatgatgaattagatgtaacatgtacggaaactttttctgttcatgtgaataa |
299 |
Q |
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| T |
55175583 |
tagttgaaactgttagctcgcaaaaaggttaccttgctgatcatattgatgatgaattagatgtaacatgtacggaaactttttctgttcatgtgaataa |
55175682 |
T |
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| Q |
300 |
accaaatccaacaggtaacatgagacaagaagtacaagaatatcaaaagacaagtgacatgtt |
362 |
Q |
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| T |
55175683 |
accaaatccaacaggtaacatgagacaagaagtacaagaatatcaaaagacaagtgacatgtt |
55175745 |
T |
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