View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9102_high_2 (Length: 327)

Name: NF9102_high_2
Description: NF9102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9102_high_2
NF9102_high_2
[»] chr3 (12 HSPs)
chr3 (19-191)||(55124127-55124299)
chr3 (190-274)||(5234722-5234806)
chr3 (190-274)||(20108062-20108146)
chr3 (192-283)||(12945472-12945563)
chr3 (192-274)||(29835777-29835859)
chr3 (192-274)||(29702392-29702474)
chr3 (202-274)||(39831204-39831276)
chr3 (190-279)||(55406377-55406465)
chr3 (278-317)||(55114311-55114350)
chr3 (205-274)||(31654619-31654689)
chr3 (192-274)||(33213418-33213500)
chr3 (230-282)||(49359629-49359681)
[»] chr7 (9 HSPs)
chr7 (190-279)||(34095848-34095937)
chr7 (190-274)||(6444158-6444242)
chr7 (190-274)||(47329661-47329745)
chr7 (202-274)||(45974452-45974524)
chr7 (202-274)||(29245281-29245353)
chr7 (230-284)||(31520862-31520916)
chr7 (241-282)||(8419407-8419448)
chr7 (230-278)||(37109846-37109894)
chr7 (230-278)||(37346996-37347044)
[»] chr4 (11 HSPs)
chr4 (190-274)||(45988119-45988203)
chr4 (190-274)||(42063006-42063090)
chr4 (190-274)||(47028103-47028187)
chr4 (192-274)||(24226873-24226955)
chr4 (205-273)||(55917405-55917473)
chr4 (202-274)||(20135440-20135512)
chr4 (192-274)||(15530063-15530145)
chr4 (208-277)||(28683090-28683158)
chr4 (205-274)||(42980257-42980327)
chr4 (230-277)||(9139247-9139294)
chr4 (230-286)||(25701221-25701277)
[»] scaffold0896 (1 HSPs)
scaffold0896 (190-274)||(1943-2027)
[»] scaffold0662 (1 HSPs)
scaffold0662 (190-274)||(6982-7066)
[»] chr6 (3 HSPs)
chr6 (190-274)||(7124337-7124421)
chr6 (192-277)||(945095-945180)
chr6 (190-270)||(4181239-4181319)
[»] chr1 (9 HSPs)
chr1 (190-274)||(45319610-45319694)
chr1 (192-277)||(49410520-49410605)
chr1 (193-286)||(47036264-47036357)
chr1 (202-274)||(12983549-12983621)
chr1 (202-274)||(45346267-45346339)
chr1 (205-268)||(22105401-22105464)
chr1 (231-276)||(39249551-39249596)
chr1 (230-286)||(32267021-32267077)
chr1 (230-278)||(47682626-47682674)
[»] chr2 (10 HSPs)
chr2 (190-283)||(33751500-33751593)
chr2 (190-274)||(37080722-37080806)
chr2 (202-279)||(17692623-17692700)
chr2 (190-274)||(7091106-7091190)
chr2 (202-279)||(37259669-37259746)
chr2 (202-274)||(16431880-16431952)
chr2 (202-280)||(14805571-14805649)
chr2 (192-277)||(30778292-30778377)
chr2 (202-263)||(15332762-15332823)
chr2 (230-278)||(26357576-26357624)
[»] chr5 (9 HSPs)
chr5 (192-279)||(40321492-40321579)
chr5 (192-274)||(41405995-41406077)
chr5 (192-279)||(31480458-31480545)
chr5 (192-274)||(1836012-1836094)
chr5 (192-274)||(39885834-39885916)
chr5 (192-277)||(6767925-6768010)
chr5 (202-274)||(24782712-24782784)
chr5 (230-277)||(5112441-5112488)
chr5 (230-278)||(7693229-7693277)
[»] chr8 (9 HSPs)
chr8 (190-274)||(3877572-3877656)
chr8 (202-274)||(533713-533785)
chr8 (192-277)||(30089182-30089270)
chr8 (202-274)||(13800643-13800715)
chr8 (192-268)||(1786495-1786571)
chr8 (230-284)||(6098662-6098716)
chr8 (230-275)||(465843-465888)
chr8 (230-286)||(4108913-4108969)
chr8 (204-275)||(30936662-30936734)
[»] scaffold0166 (1 HSPs)
scaffold0166 (202-274)||(25095-25167)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 55124127 - 55124299
Alignment:
Q  19 accatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattatatgagcaagtatattatgtgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55124127 accatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattatatgagcaagtatattatgtgca 55124226  T
Q  119 atgttgggctaaaatacattatgccaaatttctaatgtgtatatatctatatttatatctgtatggtatttaa 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55124227 atgttgggctaaaatacattatgctaaatttctaatgtgtatatatctatatttatatctgtatggtatttaa 55124299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 5234722 - 5234806
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5234722 aacacacatgacacatggcgcattattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaattt 5234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 20108062 - 20108146
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| || |||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||| |||||    
T  20108062 aacacacatgacatatggcgcattattattggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccatagaattt 20108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 12945472 - 12945563
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatt 283  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| ||||| || |||||    
T  12945472 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccctttatt 12945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 29835777 - 29835859
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||  ||||| ||||||||||||| ||||||| ||||||||   |||||||||||||||||||||||||||| |||||    
T  29835777 cacacatgccatgtgacgcattattattggatgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaattt 29835859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 29702474 - 29702392
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| || |||| |||||||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  29702474 cacacatgacatatggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 29702392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 39831276 - 39831204
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| ||||||||||||| |    |||||||||||| ||||||||||||||| |||||    
T  39831276 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 39831204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 55406377 - 55406465
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |||||||| | ||||| |||||||||  |||| |||||  ||||||||||    
T  55406377 aacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaa-tcaattgaacaactttaccatcgaattttccat 55406465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 55114350 - 55114311
Alignment:
Q  278 attattttaatcacaattcacgaggaaacacacaggttct 317  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  55114350 attattttaatcacaattcacgaggaaacacacagcttct 55114311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 31654689 - 31654619
Alignment:
Q  205 tggcgcattattattgaat-gtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    |||| ||||||||||| || |||||||||||||| | ||||||| ||||||||||||||||| || |||||    
T  31654689 tggcacattattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaattt 31654619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 33213500 - 33213418
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| || || | ||||||||||| ||||| | |||||||| | |||||||||||| |||||||| |||||| |||||    
T  33213500 cacacatgacatatgacacattattattggatgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaattt 33213418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 49359629 - 49359681
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattat 282  Q
    ||||||||  |||||||||| ||  |||||||||||||| |||||||||||||    
T  49359629 taacttcacaaaaaaagtcattttcatgacttcaccatagaattttccattat 49359681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 34095848 - 34095937
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  34095848 aacacacatgacacgtggcgcattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcccat 34095937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 6444158 - 6444242
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  6444158 aacacacatgacatgtggcgcattattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaattt 6444242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 47329661 - 47329745
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  47329661 aacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaattt 47329745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 45974452 - 45974524
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  45974452 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 45974524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 29245281 - 29245353
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||| ||||||||||| |||||    
T  29245281 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaattt 29245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 31520862 - 31520916
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattattt 284  Q
    |||||||| ||||||||||| ||  ||||||||| ||||||||||||| ||||||    
T  31520862 taacttcaccaaaaaagtcattttcatgacttcatcataaaattttccgttattt 31520916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 8419407 - 8419448
Alignment:
Q  241 aaaaagtcaattgaatgacttcaccataaaattttccattat 282  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  8419407 aaaaagtcaattgaagaacttcaccataaaattttcctttat 8419448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 37109894 - 37109846
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 278  Q
    |||||||| ||||||||||| ||  |||||||||||||| |||||||||    
T  37109894 taacttcaccaaaaaagtcatttttatgacttcaccatagaattttcca 37109846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 37347044 - 37346996
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 278  Q
    |||||||| ||||||| ||| ||  ||||||||||||||||||||||||    
T  37347044 taacttcaccaaaaaaatcattttcatgacttcaccataaaattttcca 37346996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 45988203 - 45988119
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  45988203 aacacacatgacatgtggcgcatcattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaattt 45988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 42063090 - 42063006
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  42063090 aacacacatgacacgtggcgtattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 42063006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 47028187 - 47028103
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  47028187 aacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 47028103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 24226955 - 24226873
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| |||||    
T  24226955 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaattt 24226873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 55917473 - 55917405
Alignment:
Q  205 tggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaatt 273  Q
    ||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||| ||||    
T  55917473 tggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatt 55917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 20135440 - 20135512
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| ||||||||||||| |    |||||||||||| ||||||||||||||| |||||    
T  20135440 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 20135512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 15530145 - 15530063
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| ||||| | |||| ||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  15530145 cacacatgacatgtgacacatttttattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 15530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 28683090 - 28683158
Alignment:
Q  208 cgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||||||| ||||||||||||||| ||  ||||||||||| || |||||||||||| ||||||||    
T  28683090 cgcattattattggatgtaggataacttc-accgaaaagtcaatttaaggacttcaccatagaattttcc 28683158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 42980257 - 42980327
Alignment:
Q  205 tggcgcattattattgaat-gtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    |||| ||||||||||| || |||||||||||||| | ||||||| ||||||||||||||||| || |||||    
T  42980257 tggcacattattattggatcgtaggataacttcatcgaaaaagttaattgaatgacttcaccgtagaattt 42980327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 9139294 - 9139247
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    |||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  9139294 taacttcaccaaaaaagtcaatttcatgacttcaccatagaattttcc 9139247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 25701221 - 25701277
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 286  Q
    |||||| | ||||||||||| |   ||||||||||||||||||||||| ||||||||    
T  25701221 taactttaccaaaaaagtcattatcatgacttcaccataaaattttcctttatttta 25701277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 1943 - 2027
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||    
T  1943 aacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaattt 2027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 7066 - 6982
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  7066 aacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 7124421 - 7124337
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||    
T  7124421 aacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaattt 7124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 945095 - 945180
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||| ||||| ||||||||||||||||||||  |||||||| ||||||||||||||||   ||||||||||| ||||||||    
T  945095 cacacatgacatgtgacgcattattattgaatgtagagtaacttcatcaaaaaagtcaattgaggaacttcaccatagaattttcc 945180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 4181239 - 4181319
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaa 270  Q
    ||||||||||| |  || ||||||||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  4181239 aacacacatgacacatgacgcattattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccataaa 4181319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 45319694 - 45319610
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    |||||| |||| | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||    
T  45319694 aacacaaatgacacgtggcgcattattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 45319610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 49410520 - 49410605
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||| | ||||||||| |||||  ||||||||||| ||||||||    
T  49410520 cacacatgacatgtggcgcattattattggatgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattttcc 49410605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 47036264 - 47036357
Alignment:
Q  193 acacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 286  Q
    |||||||| ||||| ||||||||||||| ||||| | ||||||||   || ||||||||||||||||||||||||| ||||| || ||||||||    
T  47036264 acacatgacatgtgacgcattattattggatgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaatttccctttatttta 47036357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 12983549 - 12983621
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||| | ||||||||||||| |||||    
T  12983549 atgtggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaattt 12983621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 45346339 - 45346267
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| |||||||||||| || |||||    
T  45346339 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaattt 45346267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 22105464 - 22105401
Alignment:
Q  205 tggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccata 268  Q
    |||||||||||||||| |||||||||||||||| | |||||||||||||||  |||||| ||||    
T  22105464 tggcgcattattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcata 22105401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 39249551 - 39249596
Alignment:
Q  231 aacttcaacaaaaaagtcaattgaatgacttcaccataaaattttc 276  Q
    ||||||| ||||||||| ||||||| |||||||||||| |||||||    
T  39249551 aacttcaccaaaaaagttaattgaaggacttcaccatagaattttc 39249596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 32267077 - 32267021
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 286  Q
    ||||||||  |||||||||| |   ||||||||||||||||||||||| ||||||||    
T  32267077 taacttcacaaaaaaagtcattcttatgacttcaccataaaattttcctttatttta 32267021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 47682626 - 47682674
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 278  Q
    |||||||| ||||||||||| |   ||||||||||||||||||||||||    
T  47682626 taacttcaccaaaaaagtcactctcatgacttcaccataaaattttcca 47682674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 33751593 - 33751500
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatt 283  Q
    ||||||| ||||||||||| ||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||| ||||| ||||||||    
T  33751593 aacacacgtgatatgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttcccattatt 33751500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 37080722 - 37080806
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  37080722 aacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaattt 37080806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 17692623 - 17692700
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| ||||||||||    
T  17692623 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 7091106 - 7091190
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||| ||||| ||||| ||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||| |||||    
T  7091106 aacacacgtgatacgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaattt 7091190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 37259746 - 37259669
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| ||||| ||||    
T  37259746 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccat 37259669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 16431880 - 16431952
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  16431880 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 16431952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 14805649 - 14805571
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccatt 280  Q
    ||||||||||||||||||| |||||||||||||||    ||||| |||||| ||||||||||||||| ||||| |||||    
T  14805649 atgtggcgcattattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttcccatt 14805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 30778377 - 30778292
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||| ||||||| ||||||||||||||||||  |||||||| | |||||||||||| ||  |||||||| || ||||||||    
T  30778377 cacacatgacatgtggcacattattattgaatgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattttcc 30778292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 15332762 - 15332823
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttca 263  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||    
T  15332762 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttca 15332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 26357624 - 26357576
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 278  Q
    |||||||| || |||||||| ||  ||||||||||||||||||||||||    
T  26357624 taacttcatcagaaaagtcattttcatgacttcaccataaaattttcca 26357576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 40321492 - 40321579
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| ||||| ||||    
T  40321492 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccat 40321579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 41406077 - 41405995
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| |||||    
T  41406077 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaattt 41405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 31480545 - 31480458
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 279  Q
    ||||||||| ||||| ||||||||||||| ||||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  31480545 cacacatgacatgtgacgcattattattggatgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaatttcccat 31480458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 1836012 - 1836094
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | ||||| |||||||||  ||||||||||| |||||    
T  1836012 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaattt 1836094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 39885834 - 39885916
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||| ||||||| |||||||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  39885834 cacacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 39885916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 6768010 - 6767925
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||| ||||||||||||||||||| ||||||  |||||||| | ||||||||||||||   ||||||||||| ||||||||    
T  6768010 cacacatgacatgtggcgcattattattggatgtagagtaacttcaccgaaaaagtcaattgaggaacttcaccatagaattttcc 6767925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 24782784 - 24782712
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  24782784 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 24782712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 5112441 - 5112488
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    |||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  5112441 taacttcaccaaaaaagtcattttcatgacttcaccataaaattttcc 5112488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 7693277 - 7693229
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 278  Q
    |||||||| || |||||||| || ||||||||||||||| |||||||||    
T  7693277 taacttcaccagaaaagtcattttaatgacttcaccatagaattttcca 7693229  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 3877656 - 3877572
Alignment:
Q  190 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |||||||| | ||||| ||||||||| |||||||||||| |||||    
T  3877656 aacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaattt 3877572  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 533713 - 533785
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  533713 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 533785  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 30089182 - 30089270
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtagga---taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 277  Q
    ||||||||| ||||||| ||||||||||| ||||||||   ||||||||   ||||||||||||||| |||||||||||| ||||||||    
T  30089182 cacacatgacatgtggcacattattattggatgtaggaggataacttcactgaaaaagtcaattgaaagacttcaccatagaattttcc 30089270  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 13800715 - 13800643
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||| ||||||||||||| ||||||  ||||||||   |||||||||||||||||||||||||||| |||||    
T  13800715 atgtgacgcattattattggatgtagagtaacttcactgaaaaagtcaattgaatgacttcaccatagaattt 13800643  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 1786571 - 1786495
Alignment:
Q  192 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccata 268  Q
    ||||||||| | ||||||||||||||||  ||||| | ||||||||  ||||||||||||||||  |||||||||||    
T  1786571 cacacatgacacgtggcgcattattattagatgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccata 1786495  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 6098662 - 6098716
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattattt 284  Q
    |||||||| ||||||||| | ||  |||||||||||||| |||||||||||||||    
T  6098662 taacttcaccaaaaaagttattttcatgacttcaccatagaattttccattattt 6098716  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 465888 - 465843
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaatttt 275  Q
    |||||||| || |||||||| || ||||||||||||||||||||||    
T  465888 taacttcaccacaaaagtcattttaatgacttcaccataaaatttt 465843  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 4108913 - 4108969
Alignment:
Q  230 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 286  Q
    |||||| | ||||||||||| ||  ||||||||||||||||||||||| || |||||    
T  4108913 taactttaccaaaaaagtcattttcatgacttcaccataaaattttcctttctttta 4108969  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 30936734 - 30936662
Alignment:
Q  204 gtggcgcattattattgaatgtaggat-aacttcaacaaaaaagtcaattgaatgacttcaccataaaatttt 275  Q
    ||||| ||||||||||| ||||||||| || || | | |||||||||||| ||| ||||||||||| ||||||    
T  30936734 gtggcacattattattggatgtaggattaattttaccgaaaaagtcaattaaataacttcaccatagaatttt 30936662  T

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Target: scaffold0166 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 25167 - 25095
Alignment:
Q  202 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 274  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  25167 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 25095  T

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