View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9102_high_3 (Length: 236)
Name: NF9102_high_3
Description: NF9102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9102_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 43383517 - 43383291
Alignment:
| Q |
6 |
tgctttcttgttctttggatttgaattagcaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaatta |
105 |
Q |
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| T |
43383517 |
tgctttcttgttctttggatttgaattagaaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaatta |
43383418 |
T |
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| Q |
106 |
ggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaag |
205 |
Q |
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| T |
43383417 |
ggtggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaag |
43383318 |
T |
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| Q |
206 |
tacgagcaatgttgttcg-tgatgatg |
231 |
Q |
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| T |
43383317 |
tacgagcaatgttgttcgatgatgatg |
43383291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 25870237 - 25870023
Alignment:
| Q |
10 |
ttcttgttctttggatttgaattagcaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaa---caagttgttgtcttctgaaattag |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25870237 |
ttcttgttctttggatttgaattagcaagtaaaagcaaagaagcagcaccttcctgttcttctggagtcacaagttgttgttgttgtcttctgaaattag |
25870138 |
T |
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| Q |
107 |
gaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagt |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870137 |
gaggagggttaatgcctctccattgacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagt |
25870038 |
T |
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| Q |
207 |
acgagcaatgttgtt |
221 |
Q |
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| T |
25870037 |
acgagcaatgttgtt |
25870023 |
T |
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