View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9102_low_1 (Length: 396)
Name: NF9102_low_1
Description: NF9102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9102_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 43383905 - 43383522
Alignment:
| Q |
8 |
ttggtgttggtgttgtgggttccactttttcccaatgacacctcttatgaccaccgagtgcttgtccagtgctaaataccctcaaacatatgctacactt |
107 |
Q |
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| T |
43383905 |
ttggtgttggtgttttgggttccactttttcccaatgacacctcttatgaccaccgagtgcttgtccagtgctaaataccctcaaacatatgctacactt |
43383806 |
T |
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| Q |
108 |
gtgtccgatgatgcagtttatcatctcattattattaaccgcttcccctt------ccacgtttccaccacgagtcattgtgtcatcgtgaggcgtcatg |
201 |
Q |
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| T |
43383805 |
gtgtccgatgatgcagttaatcatctcattattattaaccgcttccccttccacttccacgtttccaccacgagtcattgtgtcatcgtgaggcgtcatg |
43383706 |
T |
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| Q |
202 |
aatgtccttccagtagtagaattagaagaagcggtta------ttgttgtattggcgaaacagcccttgacattcttgtgactagccctatgtcctccaa |
295 |
Q |
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| T |
43383705 |
aacgtccttccagtagtagaattagaagaagcggttattgttgttgttgtattggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaa |
43383606 |
T |
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| Q |
296 |
gtgcctgatgggatccaaatactttgttacaacatgaacacacaaactgatcattctcatcgaccatcaccgttgttgttgattttg |
382 |
Q |
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| T |
43383605 |
gtgcctgatgggatccaaatactttgttacaacacgaacacacaaactgatcatcctcatcgac---caccgttgttgttgcttttg |
43383522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 25870584 - 25870423
Alignment:
| Q |
11 |
gtgttggtgttgtgggttccactttttcccaatgacacctcttatgaccaccgagtgcttgtccagtgctaaataccctcaaacatatgctacacttgtg |
110 |
Q |
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| T |
25870584 |
gtgttggtgtcgtgggttcccctttatcccaatgacacctcttatgaccaccgagtgcttgtccagtgctaaataccctcaaacatatgctacacttgtg |
25870485 |
T |
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| Q |
111 |
tccgatgatgcagt--ttatca-tctcattattattaaccgcttccccttccacgtttccac |
169 |
Q |
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|||||||||||||| |||| | | | |||| |||||||| |||||||||| |||||||||| |
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| T |
25870484 |
tccgatgatgcagtcattattattattattactattaacctcttccccttcaacgtttccac |
25870423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 25870382 - 25870258
Alignment:
| Q |
249 |
ggcgaaacagcccttgacattcttgtgactagccctatgtcctccaagtgcctgatgggatccaaatactttgttacaacatgaacacacaaactgatca |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
25870382 |
ggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatccaaatactttgttgcaacacgaacacacaaactgatc- |
25870284 |
T |
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| Q |
349 |
ttctcatcgaccatcaccgttgttgttg |
376 |
Q |
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|||||| ||| |||||||||||||| |
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| T |
25870283 |
--ctcatcatccaccaccgttgttgttg |
25870258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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