View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9103_low_1 (Length: 418)
Name: NF9103_low_1
Description: NF9103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9103_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 2489298 - 2488912
Alignment:
| Q |
20 |
tagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaatatgtggttcagaaattgaaattttgtgttatctt |
119 |
Q |
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| T |
2489298 |
tagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaatatgtggttcagaaattgaaattttgtgttatctt |
2489199 |
T |
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| Q |
120 |
ttttccatcagctactttatgtaattactttcatcttttgtattttgtaatattaagagatgaagggttacaacttacaataaggatttcagaactccct |
219 |
Q |
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| T |
2489198 |
tttttcatcagctactttatgtaactactttcatcttttgtattttgtaatattaagagatgaagggttacaacttacaataaggatttcagaactccct |
2489099 |
T |
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| Q |
220 |
cttttaaaatattaatttataactactttctgtttgtagnnnnnnngttcaattagacttacaataaggattaactttgaaactcaatcgtcctagnnnn |
319 |
Q |
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| T |
2489098 |
cttttaaaatattaatttataactactttctgtttgtagtttttttgttcaattagacttacaataaggactaactttgaaactcaatcgtcctagtttt |
2488999 |
T |
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| Q |
320 |
nnnnataatggcaaatatatattataaattaaaataaaaaggagaggtctcctacaagaatcctaacatacatacgaatttgagtat |
406 |
Q |
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| T |
2488998 |
ttttataatggcaaatatatattataaattaaaataaaaaggagaggtctcctacaagagtccaaacatacatgcaaatttgagtat |
2488912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 2524329 - 2524269
Alignment:
| Q |
77 |
catattaatatgtggttcagaaattgaaattttgtgttatcttttttccatcagctacttt |
137 |
Q |
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| T |
2524329 |
catagtaatatgtggtttagtaattgaaattttgggttatcttttttggattagctacttt |
2524269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 1010247 - 1010300
Alignment:
| Q |
326 |
aatggcaaatatatattataaattaaa-ataaaaaggagaggtctcctacaaga |
378 |
Q |
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| T |
1010247 |
aatggcaaatatatattatatattaaatataaaaaggagaaatctcctacaaga |
1010300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 10348206 - 10348257
Alignment:
| Q |
326 |
aatggcaaatatatattataaattaaaataaaaaggagaggtctcctacaaga |
378 |
Q |
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| T |
10348206 |
aatggcaaataaatattataacttaaac-aaaaaggagaggtctcctacaaga |
10348257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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