View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9103_low_3 (Length: 246)
Name: NF9103_low_3
Description: NF9103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9103_low_3 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 24172288 - 24172073
Alignment:
| Q |
17 |
acaaagtgtcatttgaaatccactttcttctctcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaa |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24172288 |
acaaagtgtcatttgaaattcactttcttctctcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaa |
24172189 |
T |
|
| Q |
117 |
atatttaacaatagggaaacttcaggttttgattgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttatt |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24172188 |
atatttaacaatagggaaacttcaggttttgtttgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttatt |
24172089 |
T |
|
| Q |
217 |
atatcctcaatgatgt |
232 |
Q |
| |
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|||||||||||||||| |
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| T |
24172088 |
atatcctcaatgatgt |
24172073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 14860039 - 14859839
Alignment:
| Q |
18 |
caaagtgtcatttgaaatccactttcttctctcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaaa |
117 |
Q |
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||||||| |||||| ||||||||| ||| | |||||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |||||||||| |
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| T |
14860039 |
caaagtgccatttggaatccacttccttttatcattcatactattgttctttctcaaattacaaatagaagatgtatgaccttctctttgacaataaaaa |
14859940 |
T |
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| Q |
118 |
tatttaacaatagggaaacttcaggttttgattgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttatta |
217 |
Q |
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| T |
14859939 |
cacttaacaaaaggagaactttaagttttgtttggg-cgaaagaattttctaaaaagtttttcatgatatttttgatgatagcccaaaccggctttatta |
14859841 |
T |
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| Q |
218 |
ta |
219 |
Q |
| |
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|| |
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| T |
14859840 |
ta |
14859839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 114299 - 114499
Alignment:
| Q |
18 |
caaagtgtcatttgaaatccactttcttctctcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaaa |
117 |
Q |
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||||||| |||||||||||||||| ||| | |||||||||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
114299 |
caaagtgccatttgaaatccacttccttttatcattcatactattgttctttctcaaattacaaatagaagatgtatgaccttctcttccacaataaaaa |
114398 |
T |
|
| Q |
118 |
tatttaacaatagggaaacttcaggttttgattgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttatta |
217 |
Q |
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| ||||||| ||| ||| | | |||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
114399 |
cacttaacaaaaggagaacatgaagttttgtttggg-cgaaagaattttctaaaaagttttacatgattttttggatgatagcccaaaccggctttatta |
114497 |
T |
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| Q |
218 |
ta |
219 |
Q |
| |
|
|| |
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|
| T |
114498 |
ta |
114499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 19812 - 19643
Alignment:
| Q |
49 |
tcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaaatatttaacaatagggaaacttcaggttttga |
148 |
Q |
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||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||||| |
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| T |
19812 |
tcattcatatcattgttctttcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgt |
19713 |
T |
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| Q |
149 |
ttgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttattata |
219 |
Q |
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||||| ||||||| ||| || ||||||||||||||||||| || ||||||||||| ||| ||||||||| |
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| T |
19712 |
ttggg-cgaaagaatttttgaaaaagtttttcatgattttttcgacgatagcccaaaccggctttattata |
19643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 3276125 - 3275956
Alignment:
| Q |
49 |
tcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaaatatttaacaatagggaaacttcaggttttga |
148 |
Q |
| |
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||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||||| |
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| T |
3276125 |
tcattcatatcattgttctttcttaaattacaaatagaagatgtatgaccttctcttccacaataaaaacatttaacaaaaggagaacttgaggttttgt |
3276026 |
T |
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| Q |
149 |
ttgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttattata |
219 |
Q |
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||||| ||||||| ||| || ||||||||||||||||||| || ||||||||||| ||| ||||||||| |
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| T |
3276025 |
ttggg-cgaaagaatttttgaaaaagtttttcatgattttttcgacgatagcccaaaccggctttattata |
3275956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 8825580 - 8825412
Alignment:
| Q |
49 |
tcattcataccattgttctttctaatattacaaatagaagatgtatgatcttctcttccacaataaaaatatttaacaatagggaaacttcaggttttga |
148 |
Q |
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||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||| | || || | |
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| T |
8825580 |
tcattcatatcattgttctttcttaaattacaaatagaagatgtatgaccttctcttacacaataaaaacttttaacaaaaggggaacttgaagtctt-a |
8825482 |
T |
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| Q |
149 |
ttgggaagaaagaactttctaataagtttttcatgattttttggatgatagcccaaatcggttttattata |
219 |
Q |
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|| || ||||||| ||| ||| || |||||||||||||| ||||||||||||||| ||| ||||||||| |
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| T |
8825481 |
tttgggcgaaagaattttgtaa-aatattttcatgatttttcggatgatagcccaaaccggctttattata |
8825412 |
T |
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