View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9104_high_5 (Length: 259)
Name: NF9104_high_5
Description: NF9104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9104_high_5 |
 | |
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| [»] scaffold0171 (1 HSPs) |
| | |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 14867967 - 14867868
Alignment:
| Q |
140 |
tagatgaaacaaattcaataacatcattaattaatttgtgcaaacttacttatcataaattacaatctccacgtttccaaaaggaaaactaggaagcaaa |
239 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14867967 |
tagatgaaacaaattcaataacatcattaattaatttgtgcaaacttacttatcataaattacaatctccacgtttccaaaaggaaaactaggaagcaaa |
14867868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14868073 - 14868008
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaagtaatatagtagaaaaaagatgaaacac |
66 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14868073 |
atttggtaatatattctattttggcctcttaaaaaaaagtaatatagtagaaaaaagatgaaacac |
14868008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13636706 - 13636664
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaagtaat |
43 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
13636706 |
atttggtaatatatctcattttagcctcttaaaaaaaagtaat |
13636664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13697895 - 13697858
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
13697895 |
atttggtaatatatctcattttagcctcttaaaaaaaa |
13697858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22732448 - 22732410
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaag |
39 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
22732448 |
atttggtaatatattccattttggcctctttaaaaaaag |
22732410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34017868 - 34017831
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
34017868 |
atttggtaatatatttcattttagcctcttcaaaaaaa |
34017831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3534241 - 3534205
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaa |
37 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3534241 |
atttggtaatatattccattttagcctcttaaaaaaa |
3534205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 12187383 - 12187347
Alignment:
| Q |
2 |
tttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
12187383 |
tttggtaatgtatttcattttagcctcttaaaaaaaa |
12187347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 37537082 - 37537048
Alignment:
| Q |
4 |
tggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
37537082 |
tggtaatatatttcattttagcctcttaaaaaaaa |
37537048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8557 - 8520
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8557 |
atttgctaatatatttcattttagcctcttaaaaaaaa |
8520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 183843 - 183876
Alignment:
| Q |
4 |
tggtaatatatttcattttggcctcttaaaaaaa |
37 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
183843 |
tggtaatatatttcattttagcctcttaaaaaaa |
183876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4784915 - 4784952
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
4784915 |
atttggtaatatattccattttagcctcttaaaaaaaa |
4784952 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36176514 - 36176477
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36176514 |
atttggtaatatatttcattttaacctcttaaaaaaaa |
36176477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 30696333 - 30696365
Alignment:
| Q |
6 |
gtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
30696333 |
gtaatatatttcattttagcctcttaaaaaaaa |
30696365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25530271 - 25530308
Alignment:
| Q |
1 |
atttggtaatatatttcattttggcctcttaaaaaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25530271 |
atttggtaatatatttcattttagcctcttcaaaaaaa |
25530308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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