View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9104_low_2 (Length: 1048)

Name: NF9104_low_2
Description: NF9104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9104_low_2
NF9104_low_2
[»] chr1 (10 HSPs)
chr1 (15-784)||(2568777-2569543)
chr1 (856-1036)||(2569616-2569795)
chr1 (284-456)||(29119324-29119495)
chr1 (284-454)||(32676136-32676305)
chr1 (284-433)||(8462129-8462276)
chr1 (284-381)||(8809715-8809811)
chr1 (284-378)||(25161309-25161402)
chr1 (365-456)||(46435465-46435556)
chr1 (284-345)||(46435563-46435624)
chr1 (285-318)||(16679835-16679868)
[»] chr7 (7 HSPs)
chr7 (284-441)||(35341536-35341692)
chr7 (284-456)||(48250154-48250327)
chr7 (308-456)||(32694570-32694717)
chr7 (283-456)||(31306868-31307046)
chr7 (389-456)||(48072491-48072558)
chr7 (389-440)||(40856949-40857000)
chr7 (202-235)||(35923474-35923507)
[»] chr5 (14 HSPs)
chr5 (289-456)||(33858538-33858704)
chr5 (284-456)||(11607534-11607705)
chr5 (284-456)||(19357262-19357432)
chr5 (300-456)||(33271630-33271785)
chr5 (284-452)||(1826259-1826426)
chr5 (284-381)||(38010689-38010785)
chr5 (284-420)||(39570079-39570214)
chr5 (284-381)||(13015381-13015477)
chr5 (284-381)||(29989962-29990058)
chr5 (284-355)||(13086753-13086824)
chr5 (284-381)||(9827788-9827884)
chr5 (284-381)||(13478120-13478216)
chr5 (339-433)||(42148201-42148294)
chr5 (201-240)||(24231710-24231749)
[»] chr2 (13 HSPs)
chr2 (284-456)||(34392081-34392252)
chr2 (298-456)||(23863803-23863958)
chr2 (287-440)||(7381695-7381846)
chr2 (284-456)||(37357917-37358092)
chr2 (334-452)||(4779635-4779752)
chr2 (284-381)||(21603959-21604055)
chr2 (284-449)||(4775634-4775799)
chr2 (395-456)||(21606149-21606210)
chr2 (335-456)||(25275622-25275741)
chr2 (285-332)||(34904304-34904351)
chr2 (202-248)||(35022712-35022757)
chr2 (202-235)||(13811144-13811177)
chr2 (208-237)||(42924384-42924413)
[»] chr3 (20 HSPs)
chr3 (297-456)||(37742738-37742896)
chr3 (284-452)||(44380254-44380421)
chr3 (288-459)||(33509684-33509854)
chr3 (284-431)||(47426350-47426496)
chr3 (285-381)||(50934501-50934596)
chr3 (284-381)||(47186175-47186271)
chr3 (286-352)||(32319468-32319534)
chr3 (284-381)||(31187145-31187241)
chr3 (284-350)||(10179868-10179934)
chr3 (284-381)||(42664673-42664769)
chr3 (292-454)||(35094554-35094717)
chr3 (284-350)||(10018671-10018737)
chr3 (284-381)||(34029366-34029462)
chr3 (286-355)||(39498769-39498838)
chr3 (284-350)||(10123211-10123277)
chr3 (404-456)||(19619217-19619269)
chr3 (202-232)||(48180273-48180303)
chr3 (307-449)||(17466296-17466437)
chr3 (202-235)||(30082964-30082997)
chr3 (202-247)||(48322163-48322207)
[»] chr4 (18 HSPs)
chr4 (284-456)||(12473704-12473875)
chr4 (284-456)||(12528113-12528284)
chr4 (284-452)||(35869575-35869742)
chr4 (284-452)||(51811914-51812081)
chr4 (284-441)||(21260794-21260950)
chr4 (284-448)||(22343337-22343500)
chr4 (285-436)||(33249394-33249544)
chr4 (284-456)||(55590482-55590642)
chr4 (285-379)||(52910126-52910219)
chr4 (284-381)||(52012778-52012874)
chr4 (285-356)||(34829182-34829253)
chr4 (288-343)||(49998486-49998541)
chr4 (284-381)||(9799438-9799534)
chr4 (285-381)||(49999663-49999758)
chr4 (389-452)||(1796654-1796717)
chr4 (397-452)||(35781021-35781076)
chr4 (208-243)||(40252766-40252801)
chr4 (202-235)||(32692920-32692953)
[»] chr8 (9 HSPs)
chr8 (284-452)||(41179567-41179734)
chr8 (284-456)||(24337830-24338001)
chr8 (284-456)||(11254028-11254198)
chr8 (292-430)||(4708333-4708470)
chr8 (291-381)||(18168392-18168481)
chr8 (291-381)||(18631949-18632038)
chr8 (284-381)||(1514803-1514899)
chr8 (203-238)||(12954835-12954870)
chr8 (202-241)||(24733277-24733316)
[»] chr6 (9 HSPs)
chr6 (285-452)||(1211848-1212014)
chr6 (284-456)||(5403876-5404047)
chr6 (284-456)||(32644838-32645007)
chr6 (284-349)||(11753167-11753232)
chr6 (284-381)||(34245567-34245663)
chr6 (412-456)||(10503259-10503303)
chr6 (202-235)||(7465582-7465615)
chr6 (285-356)||(11113557-11113628)
chr6 (202-232)||(2424394-2424424)
[»] scaffold0519 (1 HSPs)
scaffold0519 (284-456)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (285-456)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (284-456)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (285-381)||(23174-23263)
[»] scaffold1444 (1 HSPs)
scaffold1444 (202-238)||(881-917)


Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 784
Target Start/End: Original strand, 2568777 - 2569543
Alignment:
Q  15 agtttttgatacgtataagagttttaatcctaatcctaacatataacctaatgaaatcaaagttgaatgtacgatctcgaaagataaattttacagacat 114  Q
    ||||||||||| ||||||||||||||||      |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2568777 agtttttgatatgtataagagttttaat------cctaacatataacctaatgaaatcaaagttgaatgtacaatctcgaaagataaattttacagacat 2568870  T
Q  115 ttatctgttgttgtgaccggaaagcctatcgacttgggaagggaggcaaccacagatcttggagtagtttttgcaacataagcgtggttaaagagtgtcc 214  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2568871 ttatctgttgttgtgaccggaatgcctatcgacatgggaagggaggcaaccacagatcttggagtagtttttgcaacataagtgtggttaaagagtgtcc 2568970  T
Q  215 cggagacactcgttaacattttccttattttaataacatttttgagcatgttgtagatgattattaagcccacttgtgtaccattaaggtaccaatgata 314  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||| ||    
T  2568971 cggaggcactcgttaacatttcccttattttaataacatttttgagcatgttgta---gattattgagcccacttgtgtaccattaaggtaccaatggta 2569067  T
Q  315 tatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattct 414  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||| ||||||||    
T  2569068 tatatcatttgccaattagagtgtgccacctaccaatgttacattacc-aatgctttatttgatata-ttttttaaagggtgtgccatgtggcacattct 2569165  T
Q  415 aattggacaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttggatgttggaac----------gtctttgcatgctcttgcttg 504  Q
    |||| | |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||          ||||||||||||||||||||     
T  2569166 aattaggcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttggatgttggaacttaatttgatgtctttgcatgctcttgcttc 2569265  T
Q  505 actcatnnnnnnnntaatattggtatttatataaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacac--tggtttccaat 602  Q
    ||||||         |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2569266 actcataaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacactatggtttccaat 2569365  T
Q  603 tatattacatgatgttatcataaaggaatctcctagagagtttctttaaaataaaaaatctccttgagagttggtcactataattaacttttacaattta 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569366 tatattacatgatgttatcataaaggaatctcctagagagtttctttaaaagaaaaaatctccttgagagttggtcactataattaacttttacaattta 2569465  T
Q  703 ttgtactaatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaaaagacataatgaatatttgcactg 784  Q
    |||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2569466 ttgtactaatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaaaagacataatgaatatttgcactg 2569543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 856 - 1036
Target Start/End: Original strand, 2569616 - 2569795
Alignment:
Q  856 aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg 955  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  2569616 aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg 2569714  T
Q  956 tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt 1036  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569715 tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt 2569795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| || |||||| |||  | |||||||||||||||||      
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttacttta-tagatgctttatttgatatatt 29119397  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||||||  || |||||||||||||| |||| ||||||| | ||||| ||||||| ||||||    
T  29119396 tttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 284 - 454
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||||||||||| |||  |||||||||||||||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttacttta-taaatgctttatttgatatatt 32676234  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 454  Q
         ||||  |||||||  || |||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 284 - 433
Target Start/End: Original strand, 8462129 - 8462276
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||  ||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||||  |||  ||||| ||||||| |||||      
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttatttta-taaatgttttatttaatatact 8462226  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 433  Q
         |||||| |||||| |||||||||| ||||||||||||||||||||    
T  8462227 tttttaaagggcgtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttacttta-taaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgat 378  Q
    |||||||||||||||||| ||  ||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttacttta-taaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 46435556 - 46435465
Alignment:
Q  365 atgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    |||||||||||||||||       |||||||||| ||  ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435556 atgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 46435624 - 46435563
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 345  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||||| |||| | |||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct 46435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatata 318  Q
    ||||||||||||||||||||||||||| ||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 1e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 284 - 441
Target Start/End: Original strand, 35341536 - 35341692
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttacttta-taaatgttttatttgatatact 35341634  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 441  Q
         ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 48250154 - 48250327
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||  | ||||||||||||||||       
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatttt 48250252  T
Q  384 nnnnnaaagggtgtgc--catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250253 tttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 32694717 - 32694570
Alignment:
Q  308 aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgac 407  Q
    ||||||||||| |||| |  ||||| ||||| ||| ||| ||||||||| |||  |||| ||||||||||||||       ||||||||||||| |||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttat-aaattctttatttgatatatttttttaaagggtgtgccacgtgac 32694619  T
Q  408 acattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694618 acattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 283 - 456
Target Start/End: Complemental strand, 31307046 - 31306868
Alignment:
Q  283 cccacttgtgtaccattaaggtaccaatgatatatatcatttgccaa-ttacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||| |||||||||||||| ||| |||||||||||||||||  |||| ||| ||||||| ||||||||||||||| |||  ||||||||||||||||  |    
T  31307046 cccatttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttacttta-taaatgctttatttgatgaa 31306948  T
Q  382 nnnnnnnaa-----agggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
           ||     ||| |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306947 aataaataaattataggatgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 389 - 456
Target Start/End: Original strand, 48072491 - 48072558
Alignment:
Q  389 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  389 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 440  Q
    |||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 35923507 - 35923474
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattt 235  Q
    ||||||||||| ||||||||||||||||||||||    
T  35923507 ttaaagagtgttccggagacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 289 - 456
Target Start/End: Complemental strand, 33858704 - 33858538
Alignment:
Q  289 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnn 388  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||           
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttat-aaatgttttatttgatatactttttt 33858606  T
Q  389 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858605 aaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 11607705 - 11607534
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||| |||| |||  ||||| |||||||||||||      
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttat-aaatgttttatttgatatact 11607607  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 19357432 - 19357262
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacttta-taaatgctttatttgatata-t 19357335  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 300 - 456
Target Start/End: Original strand, 33271630 - 33271785
Alignment:
Q  300 aaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgc 399  Q
    |||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||   |||||||||||||||||||       ||||| || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttac-ttgataaatgctttatttgatatatttttttaaaggatgcgc 33271728  T
Q  400 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    || ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 284 - 452
Target Start/End: Original strand, 1826259 - 1826426
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||||| |||| ||   | |||||||||||||||||      
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattac-tttgtagatgctttatttgatatatt 1826357  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
         ||||  |||||||  || |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826358 tttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 284 - 420
Target Start/End: Complemental strand, 39570214 - 39570079
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||| |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatact 39570116  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattgg 420  Q
         |||||||||||||  ||||| |||||||||||    
T  39570115 tttttaaagggtgtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 355  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 9827788 - 9827884
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| | || | |||||| ||||| |||||||||||| |||| |||  ||||  |||||||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattacttta-taaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||| ||||||| |||||| ||||  ||||| | |||||||||| ||||| |||||| |||  ||||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttacttta-taaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 42148201 - 42148294
Alignment:
Q  339 gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 433  Q
    |||||||||||||||||| |||  ||||| |||||||||||||       ||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  42148201 gccacctaccaatgttactttat-aaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 24231749 - 24231710
Alignment:
Q  201 gttaaagagtgtcccggagacactcgttaacattttcctt 240  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  24231749 gttaaagagtgttccggaggcactcgttaacattttcctt 24231710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 9e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 34392252 - 34392081
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttacttta-taaatgctttatttgatatatt 34392154  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||||||  || |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 298 - 456
Target Start/End: Complemental strand, 23863958 - 23863803
Alignment:
Q  298 ttaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgt 397  Q
    |||||||||||||| |||||   ||| | |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||       |||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttat-aaatgctttatttgatatatatttttaaagggtgt 23863862  T
Q  398 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||  || |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 287 - 440
Target Start/End: Original strand, 7381695 - 7381846
Alignment:
Q  287 cttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnn 386  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||||||||||| |||  |||| ||||||||||||||         
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttacttta-taaattctttatttgatata-tttt 7381792  T
Q  387 nnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 440  Q
      ||||| |||| ||||||||||||| ||||||| |||| ||||||| ||||||    
T  7381793 ttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattat 7381846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 37358092 - 37357917
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||| |||||| ||||||||| |||  ||||||||||||| ||||       
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttat-aaatgctttatttaatatttt 37357994  T
Q  384 nnnnn----aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
             |||   ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357993 tttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 452
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  334 agtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 433  Q
    |||||||| |||| ||||||||| |||  |||| ||||||||||||||       ||||| |||| || |||||||||||||||||||||||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttat-aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  434 tcattatgttacacaagtg 452  Q
     ||||||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||||||||||| |||  ||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttacttta-taaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 284 - 449
Target Start/End: Original strand, 4775634 - 4775799
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||||| | |||  || |||||||| |||| |||  || || ||||||| |||||      
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaa 449  Q
         ||||| |||||||  || |||| | |||||||||||||||||||| ||||||| |||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  395 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 335 - 456
Target Start/End: Complemental strand, 25275741 - 25275622
Alignment:
Q  335 gtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatat 434  Q
    |||||||||||| ||||||||| ||   |||| ||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||| ||||||     
T  25275741 gtgtgccacctatcaatgttactttt--aaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  435 cattatgttacacaagtgctat 456  Q
    ||||||| |||| |||||||||    
T  25275643 cattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 34904351 - 34904304
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 332  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  34904351 cacttttgtatcattaaggtaccaatgttatatatcatttgctaatta 34904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 35022712 - 35022757
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattttccttattttaat 248  Q
    |||||||||| || || ||||||||||||||||||||||||||||||    
T  35022712 ttaaagagtgccctgg-gacactcgttaacattttccttattttaat 35022757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 13811144 - 13811177
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattt 235  Q
    ||||||||||||||||||||||| ||||||||||    
T  13811144 ttaaagagtgtcccggagacactggttaacattt 13811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 42924413 - 42924384
Alignment:
Q  208 agtgtcccggagacactcgttaacattttc 237  Q
    ||||||||||||||||||||||||||||||    
T  42924413 agtgtcccggagacactcgttaacattttc 42924384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 4e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 297 - 456
Target Start/End: Original strand, 37742738 - 37742896
Alignment:
Q  297 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 396  Q
    ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||       |||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattacc-aatgctttatttgatatatttttttaaagagtg 37742836  T
Q  397 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 284 - 452
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttat-aaatgctttatttgatatact 44380352  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 288 - 459
Target Start/End: Original strand, 33509684 - 33509854
Alignment:
Q  288 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnn 387  Q
    ||||||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||||||| |||| |||  | |||||||||||||| ||          
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattacttta-tagatgctttatttgatgtatttttt 33509782  T
Q  388 naaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 459  Q
     ||||| |||||||  || |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 284 - 431
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||| |||||| |||||| ||||||||| |||  | |||||||||||||||||      
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttacttta-tagatgctttatttgatatatt 47426448  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtata 431  Q
         |||||||||||||  ||  ||||||||||||| ||||||||||    
T  47426449 tttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||| |||  |||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttacttta-taaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  286 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatg 352  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||| ||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 350  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||| | |||||| ||||  ||||| | |||||||||| |||||||||||  |||  ||||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttatttta-taaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 454
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  292 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgt--gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnna 389  Q
    |||||||||| |||||| || |||||| ||||  | ||||| || ||  |||||||||||||||||| |||  ||||  |||||||||||||       |    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttat-aaatattttatttgatatattttttta 35094652  T
Q  390 aagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 454  Q
    |||| |||| || |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094653 aaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 350  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||| ||||||||||||||||||| |||||| ||||   |||| | |||||||||| ||| |||||||| |||  ||||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttacttta-taaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 39498838 - 39498769
Alignment:
Q  286 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 355  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |||||| | ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgtta 39498769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 10123277 - 10123211
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 350  Q
    |||||||||||||||||| ||| ||||| ||||||||| | | |||| | |||||||||||||||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  404 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 48180273 - 48180303
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaaca 232  Q
    |||||||||||||||||||||||||||||||    
T  48180273 ttaaagagtgtcccggagacactcgttaaca 48180303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 449
Target Start/End: Original strand, 17466296 - 17466437
Alignment:
Q  307 caatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtga 406  Q
    ||||| ||||||||||| | |||||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||       ||||||| ||||| ||      
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttacttta-taaatgatttagttgatatatttttttaaagggtatgccacgtac 17466394  T
Q  407 cacattctaattggacaatggtatatatcattatgttacacaa 449  Q
    |||| ||||| ||  |||||||||||| ||||| | |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 30082964 - 30082997
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattt 235  Q
    ||||||||||||||| ||||||||||||||||||    
T  30082964 ttaaagagtgtcccgaagacactcgttaacattt 30082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 48322207 - 48322163
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattttccttattttaa 247  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  48322207 ttaaagagtgccccggag-cactcgttaacattttccttagtttaa 48322163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 12473704 - 12473875
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12473802  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473803 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 12528113 - 12528284
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12528211  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528212 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 284 - 452
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||  ||  ||||| |||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactata-taaatgttttatttgatatact 35869644  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
         ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 284 - 452
Target Start/End: Original strand, 51811914 - 51812081
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| |||  ||||  ||| |||||||||      
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttat-aaattttttttttgatatatt 51812012  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
         ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 284 - 441
Target Start/End: Original strand, 21260794 - 21260950
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatt 21260892  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 441  Q
         |||||||||||||  || ||||||||||||||  |||| |||||| |||||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 284 - 448
Target Start/End: Original strand, 22343337 - 22343500
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||| |||||| || ||| ||||||||| |||  |||||||||||||||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttacttta-taaatgctttatttgatatatt 22343435  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 448  Q
         ||||| |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 285 - 436
Target Start/End: Complemental strand, 33249544 - 33249394
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 384  Q
    |||||||||||||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||||||||||| |||  |||||||||||||||||||       
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttacttta-taaatgctttatttgatatatat 33249446  T
Q  385 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatca 436  Q
        |||||||||||||  || |||| ||||||||  ||||| |||||||||    
T  33249445 ttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatatca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 55590482 - 55590642
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||            ||||||||||||||      
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta------------ctttatttgatatact 55590569  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||| ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590570 tttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgata 379  Q
    |||||||||||||| | |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattacttta-taaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttacttta-taaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 34829253 - 34829182
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 356  Q
    ||||| ||||| ||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttac 34829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  288 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 343  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||  | | |||||||| |||||||||||| |||  ||||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttacttta-taaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||| ||| ||| |||| ||| | ||||| | |||||| |||||| ||| |||||||||||  |||  |||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttatttta-taaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 1796654 - 1796717
Alignment:
Q  389 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
    ||||| |||| || ||| |||| | |||||||||||||||||||| ||||||| ||||||||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtg 1796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  397 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 40252766 - 40252801
Alignment:
Q  208 agtgtcccggagacactcgttaacattttccttatt 243  Q
    |||| |||||||||||||||||||||||||||||||    
T  40252766 agtgccccggagacactcgttaacattttccttatt 40252801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 32692953 - 32692920
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattt 235  Q
    |||||||||||||||||| |||||||||||||||    
T  32692953 ttaaagagtgtcccggaggcactcgttaacattt 32692920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 284 - 452
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttacttta-taaatgttttatttaatatatt 41179636  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
         || || |||||||  || |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 24338001 - 24337830
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||| ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||||||||||| |||  | |||||||||||||||||      
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttat-agatgctttatttgatatata 24337903  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 11254198 - 11254028
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11254101  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 4708470 - 4708333
Alignment:
Q  292 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaa 391  Q
    |||||| |||||||||||||  |||||||||  |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       |||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatatttttaaa 4708372  T
Q  392 gggtgtgccatgtgacacattctaattggacaatggtat 430  Q
    |||||||||| ||| |||||||||||| | |||||||||    
T  4708371 gggtgtgccacgtggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  291 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  291 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    |||||||||||||||||||||||||||| |||||| ||||   |||| | ||||| |||| |||||||||||| |||  ||||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttacttta-taaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 12954835 - 12954870
Alignment:
Q  203 taaagagtgtcccggagacactcgttaacattttcc 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12954835 taaagagtgtctcggagacactcgttaacattttcc 12954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 24733277 - 24733316
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattttcctta 241  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  24733277 ttaaagagtgccccggagacactcgttaacatttccctta 24733316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 285 - 452
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 384  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 1211916  T
Q  385 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 452  Q
        ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 5404047 - 5403876
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||||||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||||||||||| |||  | ||| |||||||||||||      
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttat-agatgttttatttgatatatt 5403949  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||| ||  ||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403948 tttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 284 - 456
Target Start/End: Complemental strand, 32645007 - 32644838
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||| |||||||||||||| || | ||  ||||||||||| ||||||||  ||||| ||||||| |||||||| |||  |||| ||||||||| ||||      
T  32645007 ccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta--aaatactttatttgttatatt 32644910  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||||||  ||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644909 tttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacca 349  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    ||||||||||||||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttacttta-taaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  412 tctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 7465582 - 7465615
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattt 235  Q
    ||||||||||||||||||||||||||||||||||    
T  7465582 ttaaagagtgtcccggagacactcgttaacattt 7465615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 11113557 - 11113628
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 356  Q
    ||||||||||||||||||||||||||| |||||| ||||  | ||| | |||||| ||| ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttac 11113628  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 2424394 - 2424424
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaaca 232  Q
    |||||||||||||||||||||||||||||||    
T  2424394 ttaaagagtgtcccggagacactcgttaaca 2424424  T

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Target: scaffold0519 (Bit Score: 68; Significance: 8e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 11195 - 11365
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11292  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

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Target: scaffold0229 (Bit Score: 68; Significance: 8e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 285 - 456
Target Start/End: Complemental strand, 13176 - 13005
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 384  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| |  |||||||||||||||||       
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatc-gatgctttatttgatatattt 13078  T
Q  385 nnnnaaaggg-tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
        |||||| ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

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Target: scaffold0032 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 284 - 456
Target Start/End: Original strand, 34194 - 34363
Alignment:
Q  284 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 383  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||| |||| |||  ||||  |||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattacttta-taaatattttatttgatata-t 34291  T
Q  384 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 456  Q
         |||||||||| || ||||||||||||||||||| |||| |||||| | ||||| ||||||| ||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtacacaaatgctat 34363  T

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Target: scaffold0263 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 23263 - 23174
Alignment:
Q  285 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 381  Q
    ||||||||||||||||||||||       |||||||||| |||||||| |||||||||||||||||| |||| |||  ||||  |||||||||||||    
T  23263 cacttgtgtaccattaaggtac------gatatatcattggccaattagagtgtgccacctaccaattttacttta-taaatattttatttgatata 23174  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 917 - 881
Alignment:
Q  202 ttaaagagtgtcccggagacactcgttaacattttcc 238  Q
    |||||||||| ||||||||||||||||||||||||||    
T  917 ttaaagagtgccccggagacactcgttaacattttcc 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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