View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9105_high_3 (Length: 329)
Name: NF9105_high_3
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9105_high_3 |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 41067936 - 41068191
Alignment:
| Q |
28 |
agcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
127 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41067936 |
agcagagacagaagctaattcaagtgcagcagctaatgagtttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
41068035 |
T |
|
| Q |
128 |
aatgttcaaaattacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
227 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41068036 |
aatgttcaaaatgacttggatttatgggctcgcattcgggagtaagatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
41068135 |
T |
|
| Q |
228 |
aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41068136 |
aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggt |
41068191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 275
Target Start/End: Original strand, 8479570 - 8479817
Alignment:
| Q |
28 |
agcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
127 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479570 |
agcagagacagaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
8479669 |
T |
|
| Q |
128 |
aatgttcaaaattacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
227 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479670 |
aatgttcaaaatgacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
8479769 |
T |
|
| Q |
228 |
aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8479770 |
aaacattgaaaaagcaagttttagggaaaacttcgtacaacacccgtg |
8479817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 283
Target Start/End: Original strand, 10996810 - 10996984
Alignment:
| Q |
108 |
aggaaatccaggtttcgaaaaatgttcaaaattacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagt |
207 |
Q |
| |
|
||||||| ||||||||||||||| | |||| ||||||||| || || || ||||| || ||||||||| | ||||| | ||||| || |||||||| |
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| T |
10996810 |
aggaaattcaggtttcgaaaaatttccaaagggacttggatt-atgggtccgaattcgtgaatatgatcaatggatggcggacgaagattttacgcaagt |
10996908 |
T |
|
| Q |
208 |
tttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
| | || || ||||||||||| || |||||||| |||| ||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
10996909 |
tctatccaagaaacagcagcaggcagtgaaaaagaaagtgttaggaaaagcctcgtataacacccgtgcaaagggt |
10996984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 19936614 - 19936375
Alignment:
| Q |
44 |
aattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaaaatgttcaaaattact |
143 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
19936614 |
aattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcaatccaaggaaatccaggtttcgaaaaatgttcaaaatgact |
19936515 |
T |
|
| Q |
144 |
tggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagcaaacattgaaaaagca |
243 |
Q |
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|
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19936514 |
tggatttatgggctcgcattcgggagtatgatcaatgtatggccgccgaaggattcacgcaggttttgtctaaaaaacagcagcaaacattgaaaaagca |
19936415 |
T |
|
| Q |
244 |
agttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
19936414 |
agttttagggaaagcttcgtacaacacccgtgcgaagggt |
19936375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 10033246 - 10033007
Alignment:
| Q |
44 |
aattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaaaatgttcaaaattact |
143 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||| |
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| T |
10033246 |
aattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgact |
10033147 |
T |
|
| Q |
144 |
tggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagcaaacattgaaaaagca |
243 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10033146 |
tggatttatgggctcacattcgggagtatgatcaacgtatggcaagcgaaggattcacgcaagttttatctaaaaaacagcagcaaacattgaaaaagca |
10033047 |
T |
|
| Q |
244 |
agttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
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| T |
10033046 |
tgttttagggaaagcttcgtacaacacccgtgcgaagggt |
10033007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 43022143 - 43022051
Alignment:
| Q |
191 |
gaaggattcacgcaagttttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
||||| || |||||||| ||||| || || || ||||| || |||||| |||||| ||||| || |||||||| |||||||||||||||||| |
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|
| T |
43022143 |
gaaggttttacgcaagtattgtccaagaagcaacagcaggcagtgaaaaggcaagtgttaggaaacgcttcgtataacacccgtgcaaagggt |
43022051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 2934 - 2776
Alignment:
| Q |
125 |
aaaaatgttcaaaattacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagc |
224 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||| |||||||||||||| |||||| | ||||| ||||||||||| || || || || |||| |
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| T |
2934 |
aaaaatgtacaaaatgacttggatttatgggctcgcattcgcgagtatgatcaacggatggcaacagaaggcttcacgcaagtgttatccaagaagcagc |
2835 |
T |
|
| Q |
225 |
agcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
| ||||||||||||||||||||| | || ||||||||||| || ||||||||||||||| |
|
|
| T |
2834 |
aacaaacattgaaaaagcaagttctgggtaaagcttcgtataaaacccgtgcaaagggt |
2776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 26657175 - 26657339
Alignment:
| Q |
119 |
gtttcgaaaaatgttcaaaattacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaa |
218 |
Q |
| |
|
|||||||| ||||| || ||| | |||||||||||||| || ||||| || ||||||||||| ||||| | ||||| ||||| |||||||| || |||| |
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|
| T |
26657175 |
gtttcgaagaatgtccagaatgatttggatttataggcacgtattcgtgaatatgatcaacggatggcggatgaaggcttcacacaagttttatccaaaa |
26657274 |
T |
|
| Q |
219 |
aacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
| ||||| ||| || | |||| |||||| ||||| || ||| ||||||||||||| ||||||||| |
|
|
| T |
26657275 |
agcagcaacaagcagttaaaaggcaagtgttaggaaaggctccgtacaacacccgggcaaagggt |
26657339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 224 - 310
Alignment:
| Q |
197 |
ttcacgcaagttttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
||||||||||| || || || || ||||| ||||||||||||||||||||| | || ||||||||||| |||||||||||||||||| |
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|
| T |
224 |
ttcacgcaagtgttatccaagaagcagcaacaaacattgaaaaagcaagttatgggtaaagcttcgtataacacccgtgcaaagggt |
310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 1632938 - 1633080
Alignment:
| Q |
141 |
acttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagcaaacattgaaaaa |
240 |
Q |
| |
|
|||||||||||| |||||| ||| | || ||||| ||||| | ||| | ||| | || |||||||| ||||| || || || |||| || ||||||| |
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|
| T |
1632938 |
acttggatttatgggctcgtatttgtgaatatgaccaacggacggcggatgaaagttttacgcaagtattgtccaagaagcaacagcgggcagtgaaaaa |
1633037 |
T |
|
| Q |
241 |
gcaagttttagggaaagcttcgtacaacacccgtgcaaagggt |
283 |
Q |
| |
|
|||||| ||||| || |||||||| ||||||| |||||||||| |
|
|
| T |
1633038 |
gcaagtgttaggaaacgcttcgtataacacccatgcaaagggt |
1633080 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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