View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9105_low_1 (Length: 916)

Name: NF9105_low_1
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9105_low_1
NF9105_low_1
[»] chr7 (12 HSPs)
chr7 (474-655)||(16824490-16824671)
chr7 (123-281)||(16824873-16825031)
chr7 (314-392)||(16824753-16824831)
chr7 (24-83)||(16825065-16825124)
chr7 (773-826)||(16824322-16824375)
chr7 (173-226)||(16969402-16969455)
chr7 (174-255)||(16993064-16993145)
chr7 (504-596)||(10600926-10601012)
chr7 (475-558)||(16824746-16824829)
chr7 (176-215)||(17008728-17008767)
chr7 (175-229)||(16978537-16978591)
chr7 (173-215)||(17008848-17008890)
[»] chr4 (1 HSPs)
chr4 (173-255)||(35262169-35262251)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 4e-93; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 474 - 655
Target Start/End: Complemental strand, 16824671 - 16824490
Alignment:
Q  474 tcttttgtggttccgaaaaatggtgaggttatttccattgatgatgatgataaagatgaagaagggttggtgcaatgtgatgagaagatgtttgagggtt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16824671 tcttttgtggttccgaaaaatggtgaggttatttccattgatgatgatgataaagatgaagaagggttgttgcaatgtgatgagaagatgtttgagggtt 16824572  T
Q  574 gtgttgatgttgaaaaagaagtacagactgaggaaagtggaggaggaagtgatgaaattgatgctaaggatcgaaacattgt 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16824571 gtgttgatgttgaaaaagaagtacagactgaggaaagtggaggaggatgtgatgaaattgatgctaaggatcgaaacattgt 16824490  T

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Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 123 - 281
Target Start/End: Complemental strand, 16825031 - 16824873
Alignment:
Q  123 cttatggctggtgtttctagtagaactcgtagcagaaatgttttcttacttggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16825031 cttatggctggtgtttctagtagaactcgtagcagaaatgttttcttacttggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtg 16824932  T
Q  223 ttccacttgttgggtcatcaaaacggagaaagaatgttttgaactctgtttctggttct 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16824931 ttccacttgttgggtcatcaaaacggagaaagaatgttttgaactctgtttctggttct 16824873  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 16824831 - 16824753
Alignment:
Q  314 gccttttgttgttcctaagaatgttgaggttatttcgcttgattatgatgatggagatgaaaaagggtcagagcattgt 392  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16824831 gccttttgttgttcctaagaatgttgaggttatttcccttgattatgatgatggagatgaaaaagggtcagagcattgt 16824753  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 16825124 - 16825065
Alignment:
Q  24 tcattcttccattaagatcttctttcacttatcacatcacattcctaccacagaacacaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16825124 tcattcttccattaagatcttctttcacttatcacatcacattcctagcacagaacacaa 16825065  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 773 - 826
Target Start/End: Complemental strand, 16824375 - 16824322
Alignment:
Q  773 ggtgaatgagatttctgaaagtgatgatgaaagttcttctggatcctcttctgt 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16824375 ggtgaatgagatttctgaaagtgatgatgaaagttcttctggatcctcttctgt 16824322  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 16969455 - 16969402
Alignment:
Q  173 tggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttcc 226  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  16969455 tggtatttctagcagaactcgtagcaaaaatgttccattgtttggttgtcttcc 16969402  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 16993145 - 16993064
Alignment:
Q  174 ggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccacttgttgggtcatcaaaacggagaaaga 255  Q
    |||||||| ||||||||||||||||| |||||||| |||||| ||| | ||  ||||| |||||||||||| ||||||||||    
T  16993145 ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaaga 16993064  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 596
Target Start/End: Original strand, 10600926 - 10601012
Alignment:
Q  504 atttccattgatgatgatgataaagatgaagaagggttggtgcaatgtgatgagaagatgtttgagggttgtgttgatgttgaaaaagaagta 596  Q
    ||||||||||||||||||||||| ||      ||||| || ||| ||||||||||||||||||||||||  | |||||||| |||| ||||||    
T  10600926 atttccattgatgatgatgataatga------agggtcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagta 10601012  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 558
Target Start/End: Complemental strand, 16824829 - 16824746
Alignment:
Q  475 cttttgtggttccgaaaaatggtgaggttatttccattgatgatgatgataaagatgaagaagggttggtgcaatgtgatgaga 558  Q
    ||||||| ||||| || |||| ||||||||||||| ||||| ||||||||  ||||||| ||||||  | ||| ||||||||||    
T  16824829 cttttgttgttcctaagaatgttgaggttatttcccttgattatgatgatggagatgaaaaagggtcagagcattgtgatgaga 16824746  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 17008767 - 17008728
Alignment:
Q  176 tgtttctagcagaactcgtagcaaaaatgttccattgttt 215  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  17008767 tgtttctggcagaactcgtagcaaaaatgtgccattgttt 17008728  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 16978591 - 16978537
Alignment:
Q  175 gtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccact 229  Q
    ||||||| ||||||||||| ||||| ||||||||||||||  ||||| |||||||    
T  16978591 gtgtttcaagcagaactcgaagcaagaatgttccattgttccgttgtcttccact 16978537  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 17008890 - 17008848
Alignment:
Q  173 tggtgtttctagcagaactcgtagcaaaaatgttccattgttt 215  Q
    |||| |||||| ||||||||||||||| |||||||||||||||    
T  17008890 tggtctttctaacagaactcgtagcaagaatgttccattgttt 17008848  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 35262169 - 35262251
Alignment:
Q  173 tggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccacttgttgggtcatcaaaacggagaaaga 255  Q
    ||||||||||||||||||||||||||| |||||||| |||||| ||| | ||  ||||| ||| |||||||||||||||||||    
T  35262169 tggtgtttctagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtggttcatcaaaacggagaaaga 35262251  T

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