View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9105_low_12 (Length: 240)
Name: NF9105_low_12
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9105_low_12 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 13440 - 13226
Alignment:
| Q |
11 |
aactaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnn |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
13440 |
aactaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaa |
13341 |
T |
|
| Q |
110 |
nnnnntaaactgaaatttgtaacctctacaggaagcctttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13340 |
aaaaataaactgaaatttgtaacctctacaggaagcctttaatttcaaagcttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaat |
13241 |
T |
|
| Q |
210 |
gaatgataaataaac |
224 |
Q |
| |
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||||||||||||||| |
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| T |
13240 |
gaatgataaataaac |
13226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 10453604 - 10453390
Alignment:
| Q |
11 |
aactaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnn |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
10453604 |
aactaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaa |
10453505 |
T |
|
| Q |
110 |
nnnnntaaactgaaatttgtaacctctacaggaagcctttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaat |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453504 |
aaaaataaactgaaatttttaacctctacaggaagcctttaatttcaaaggttcagactacaaattggtttgcataatacattgaaaaggctgcaaaaat |
10453405 |
T |
|
| Q |
210 |
gaatgataaataaac |
224 |
Q |
| |
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||||||||||||||| |
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| T |
10453404 |
gaatgataaataaac |
10453390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 12603502 - 12603714
Alignment:
| Q |
11 |
aactaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtga-cagagaaaataatgggaatctcaaactggaggcnnn |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||| ||||||||||||| |
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| T |
12603502 |
aactaccaattaaaatgg---ttagcaaaagtaaaataaaggattttgacagattgaaagtgaacaaagaaaatagtgggaatttcaaactggaggcaaa |
12603598 |
T |
|
| Q |
110 |
nnnnn-taaactgaaatttgtaacctctacaggaagcctttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603599 |
aaaaaataaactgaaatttgtaacctctacaggaagcctttaatttcaaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaaa |
12603698 |
T |
|
| Q |
209 |
tgaatgataaataaac |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
12603699 |
tgaatgataaataaac |
12603714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 23262138 - 23261925
Alignment:
| Q |
12 |
actaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtg-acagagaaaataatgggaatctcaaactggaggcnnnn |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
23262138 |
actaacaattaaaatggagtttagcaaaattaaaataaaggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaa |
23262039 |
T |
|
| Q |
111 |
nnnnt-aaactgaaatttgtaacctctacaggaagcctt-taatttc-aaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaa |
207 |
Q |
| |
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| |||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| | || ||||||| ||||||| |
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| T |
23262038 |
acaataaaactgaaatatgtaacctctacaggaagccttcaaatttcaaaaggttcagactacaaattggtttgcaaagtaagttgaaaacagtgcaaaa |
23261939 |
T |
|
| Q |
208 |
atgaatgataaata |
221 |
Q |
| |
|
|| ||||||||||| |
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| T |
23261938 |
ataaatgataaata |
23261925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 56477809 - 56478022
Alignment:
| Q |
12 |
actaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtg-acagagaaaataatgggaatctcaaactggaggcnnnn |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
56477809 |
actaacaattaaaatggagtttagcaaaattaaaataaaggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaa |
56477908 |
T |
|
| Q |
111 |
nnnnt-aaactgaaatttgtaacctctacaggaagcctt-taatttc-aaaggttcagaatacaaattggtttgcataatacattgaaaaggctgcaaaa |
207 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| | || ||||||| ||||||| |
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| T |
56477909 |
acaataaaactgaaatatgtaacctctacaggaagccttcaaatttcaaaaggttcagactacaaattggtttgcaaagtaagttgaaaacagtgcaaaa |
56478008 |
T |
|
| Q |
208 |
atgaatgataaata |
221 |
Q |
| |
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|| ||||||||||| |
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| T |
56478009 |
ataaatgataaata |
56478022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 444927 - 445065
Alignment:
| Q |
12 |
actaccaattaaaatggagtttagcaaaagtaaaataaaggatttttacagattgaaagtg-acagagaaaataatgggaatctcaaactggaggc-nnn |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
444927 |
actaacaattaaaatggagtttagcaaaattaaaataaaggatttttttagattgaaagtgaacaaagaaaatagtgggaatctcaaactggaggcaaaa |
445026 |
T |
|
| Q |
110 |
nnnnntaaactgaaatttgtaacctctacaggaagcctt |
148 |
Q |
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||||||||||| |||||||||||||||||||||| |
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|
| T |
445027 |
acgattaaactgaaatatgtaacctctacaggaagcctt |
445065 |
T |
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