View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9105_low_3 (Length: 550)
Name: NF9105_low_3
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9105_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Complemental strand, 9899536 - 9899025
Alignment:
| Q |
18 |
cttaagccgatcaaaattttatccaatctactaacgaaccacttagatatatta----gaacatatgtctaatggtgggcgtgatcgaagatgttaacag |
113 |
Q |
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| T |
9899536 |
cttaagccgatcaaaattttatccaacctactaacgagtcacttagacatattaattagaacatatgtctaatagtgggcg--atcggagatgttaacag |
9899439 |
T |
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| Q |
114 |
tttcacatttaatgagtaagttatgtagggaggatgtattgtcattaaaccaataatttttcatgttgtcatgcaccagcaccaccctttacatataaag |
213 |
Q |
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| T |
9899438 |
tttcacatttaatgagtaagttatgtagggaggatgtattgtcattaaaccaataatttttcatgttgtcatgcaccagca------------tataaag |
9899351 |
T |
|
| Q |
214 |
caatacaccaatgtatttttgaattaataatgttacatagtttatggcaataatatacactttgattga-actagtaacttaaatgtggtcgtcactgca |
312 |
Q |
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| T |
9899350 |
caatacaacattgtatttttgaattaataatgttacatagtttatggcaataatatacactttgattgatactagtaagttaaatgtggtcgtcactgca |
9899251 |
T |
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| Q |
313 |
tctggtttggtctaaacaatcaagcacgtgacatatgatgtcatgtctcattgttaagaaatttatggaaacgtgtatttagtgtactcactgactcatt |
412 |
Q |
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| T |
9899250 |
tctggtttggtctaaacaatcaagcacgtgacatatgatgtcatgtctcattgttaagaaatttatgcaaacgtgtatttagtgtactcactgactcatt |
9899151 |
T |
|
| Q |
413 |
ggtccttgaccctacatttcagtaaataagaattggttgttgatcattcatctttctcaactacagaaataaattcaaagtaaagtcttcagattcagca |
512 |
Q |
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| T |
9899150 |
ggtccttgaccctacatctcagtaaataagaattggtcgttgatcattcatctttctcacctacagaaataaattcaaagtaaagtgttcagattcagca |
9899051 |
T |
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| Q |
513 |
gcaaatacaagaagtgtgtatagtat |
538 |
Q |
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| T |
9899050 |
gcaaatacaagaagtgtgtatagtat |
9899025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 431 - 538
Target Start/End: Complemental strand, 9867694 - 9867587
Alignment:
| Q |
431 |
tcagtaaataagaattggttgttgatcattcatctttctcaactacagaaataaattcaaagtaaagtcttcagattcagcagcaaatacaagaagtgtg |
530 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||| | | |||||||| |
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| T |
9867694 |
tcagtaagtaagcattggttgttaatcattcatctttctcacctatacaaataaattcaaagtaaagtgttcagattaagcagcaaacatatgaagtgtg |
9867595 |
T |
|
| Q |
531 |
tatagtat |
538 |
Q |
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|||||||| |
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| T |
9867594 |
tatagtat |
9867587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 409 - 538
Target Start/End: Complemental strand, 9879108 - 9878984
Alignment:
| Q |
409 |
cattggtccttgaccctacatttcagtaaataagaattggttgttgatcattcatctttctcaactacagaaataaattcaaagtaaagtcttcagattc |
508 |
Q |
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| T |
9879108 |
cattggtccttacccctacatctcagtaagtaagcattggttgttaatcattcatctttctcacctacagaaataaattcaaagtg-----ttcagatta |
9879014 |
T |
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| Q |
509 |
agcagcaaatacaagaagtgtgtatagtat |
538 |
Q |
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| T |
9879013 |
agcagcaaccatatgaagtgtgtatagtat |
9878984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 534
Target Start/End: Original strand, 7913988 - 7914073
Alignment:
| Q |
449 |
ttgttgatcattcatctttctcaactacagaaataaattcaaagtaaagtcttcagattcagcagcaaatacaagaagtgtgtata |
534 |
Q |
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| T |
7913988 |
ttgttaatgattcatctttctctcctatacaaataaattgaaagtgaagagttcagattcagcaacaaacacaagaagtgtgtata |
7914073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 537
Target Start/End: Complemental strand, 31239931 - 31239826
Alignment:
| Q |
432 |
cagtaaataagaattggttgttgatcattcatctttctcaactacagaaataaattcaaagtaaagtcttcagattcagcagcaaatacaagaagtgtgt |
531 |
Q |
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|||||||||| ||| |||||| | ||||||||||||| |||||||||||||| ||| | ||| ||||| |||||||||||| ||||||| ||||| |
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| T |
31239931 |
cagtaaataatcatttgttgttaaagattcatctttctctcgtacagaaataaattgaaaatgaagagttcaggttcagcagcaaaaacaagaaatgtgt |
31239832 |
T |
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| Q |
532 |
atagta |
537 |
Q |
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|||||| |
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| T |
31239831 |
atagta |
31239826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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