View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9105_low_4 (Length: 357)
Name: NF9105_low_4
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9105_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 74 - 344
Target Start/End: Original strand, 47287061 - 47287331
Alignment:
| Q |
74 |
acgattaggatgtggaaatgtgggattaatgaagatagtatgaagaaaattaagattaatgtgatagagctcattttgggtgggttagaagagaaaagga |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287061 |
acgattaggatgtggaaatgtgggattaatgaagatagtatgaagaaaattaggattaatgtgatagagctcattttgggtgggttagaagagaaaagga |
47287160 |
T |
|
| Q |
174 |
ggtagagtgttggaattgagtagctagtagttagattaatattttactagtaaagtgttggtgggatttgggtttgtttagtgtacgaaattaatgaaat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287161 |
ggtagagtgttggaattgagtagctagtagttggattaatattttactagtaaagtgttggtgggatttgggtttgtttagtgtacgaaattaatgaaat |
47287260 |
T |
|
| Q |
274 |
atatattgatttgaatgataaaatactacatgagatatatatatacatgcatgtggaattggtggtaagtg |
344 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287261 |
atatattgatttgaatgattaaatactacatgagatatatatatacatgcatgtggaattggtggtaagtg |
47287331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University