View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9105_low_9 (Length: 307)
Name: NF9105_low_9
Description: NF9105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9105_low_9 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 12603408 - 12603106
Alignment:
| Q |
1 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603408 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagta |
12603309 |
T |
|
| Q |
101 |
atatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12603308 |
atatattattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttgaaaaagttaagaaagatacacattctacaat |
12603209 |
T |
|
| Q |
201 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtcgttatagcaccaaagcttctaccacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603208 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtcgttatagcaccaaagcttctaccacca |
12603109 |
T |
|
| Q |
301 |
aac |
303 |
Q |
| |
|
||| |
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|
| T |
12603108 |
aac |
12603106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 13534 - 13836
Alignment:
| Q |
1 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13534 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgaatatacagatgtaaatgacactggtgtagta |
13633 |
T |
|
| Q |
101 |
atatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13634 |
atatagtattagaattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaat |
13733 |
T |
|
| Q |
201 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtcgttatagcaccaaagcttctaccacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13734 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtagttatagcaccaaagcttctaccacca |
13833 |
T |
|
| Q |
301 |
aac |
303 |
Q |
| |
|
||| |
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|
| T |
13834 |
aac |
13836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 10453698 - 10454000
Alignment:
| Q |
1 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10453698 |
ctgctatagaactcaaggtggagctaatctcaagtgcaacttaatgtgttttttctattgtgacattgtatatacagatgtaaatgacactggtgtagta |
10453797 |
T |
|
| Q |
101 |
atatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaat |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453798 |
atatagtattagaattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaat |
10453897 |
T |
|
| Q |
201 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtcgttatagcaccaaagcttctaccacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10453898 |
accacaacaatgaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgttgttatagcaccaaagcttctaccacca |
10453997 |
T |
|
| Q |
301 |
aac |
303 |
Q |
| |
|
||| |
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|
| T |
10453998 |
aac |
10454000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 4739996 - 4740302
Alignment:
| Q |
1 |
ctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgtttt-ttctattgtgaaattgtatatacagatgtaaatgacactggtgtagt |
99 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
4739996 |
ctgctatagaactcaaggtggagtaaatctcaagtgcaacttaatgtgtttttttctattgtgacattgtatatacagatgtaaatgacagtggtgtagt |
4740095 |
T |
|
| Q |
100 |
aatatagtattagaattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaattttggaaaagttaagaaagatacacattctacaa |
199 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
4740096 |
aatatagtattagaattatatattcatatgtaaatggcagtggtgtagtaaatatagtattagaatttt-gaaaaattaagaaagatgcacattctacaa |
4740194 |
T |
|
| Q |
200 |
taccacaacaat----gaatgattgtttagactgcataagaattttgtgtgtgcagctctttgggttcataaactgtcgttatagcaccaaagcttctac |
295 |
Q |
| |
|
|||||||||||| | | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4740195 |
taccacaacaatatagtattcattgttaagactacataagaattttgtgtgtgcagctctttgggttcataaactgtcattatagcaccaaagcttctac |
4740294 |
T |
|
| Q |
296 |
caccaaac |
303 |
Q |
| |
|
|||||||| |
|
|
| T |
4740295 |
caccaaac |
4740302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 31900797 - 31900701
Alignment:
| Q |
10 |
aactcaaagtggagctaatctcaagtgcaacttaatgt--gttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatat |
104 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| ||||| | |||||||| |||||| |||| || |||||||| ||| |||||||||| |
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|
| T |
31900797 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgagttttatgtattgtgacattgtacataccaatttaaatgactttggggtagtaatat |
31900701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 888614 - 888514
Alignment:
| Q |
18 |
gtggagctaatctcaagtgcaacttaatgtgtttttt--ctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatagtattagaat |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||| |||| |||||| |||| |||||||||||| |||||||||||||| |||||| ||| |
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| T |
888614 |
gtggagctaatctcaagtgcagcttaatgtgtgttttatctatcgtgacattgtacataccaatgtaaatgacattggtgtagtaatattgtattaaaat |
888515 |
T |
|
| Q |
116 |
t |
116 |
Q |
| |
|
| |
|
|
| T |
888514 |
t |
888514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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