View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9107_high_3 (Length: 297)
Name: NF9107_high_3
Description: NF9107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9107_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 246609 - 246476
Alignment:
| Q |
53 |
aatgagatcagagttaagagtnnnnnnngtctcaagttggtcttcaacaaaagaaaattatttgtgtt-gctaaactgttc-atctttgaatggatacta |
150 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| ||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
246609 |
aatgagatcagagttaagaggaaaaaaagtcttaatttggttttctacaaaagaaaattatttgtggtagctaaactgttttatctttgaatggatacta |
246510 |
T |
|
| Q |
151 |
tgaatgcatgcaaaaatccaatattatccttata |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
246509 |
tgaatgcatgcaaaaatccaatattatccttata |
246476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 246444 - 246370
Alignment:
| Q |
182 |
atatatagaattaaggtgacaaagatttcttacacaaaattagtttttatttaatttcttccatatataaagtga |
256 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
246444 |
atatatagaattaaggtggcaaagatttcttacacaaaattagtttttatttaatttcttccatatatacagtga |
246370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 246743 - 246705
Alignment:
| Q |
1 |
taaaaagattaattgtcaagaaatgcattgtatatataa |
39 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
246743 |
taaaaagatcaattttcaagaaatgcattgtatatataa |
246705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University