View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9107_low_13 (Length: 255)

Name: NF9107_low_13
Description: NF9107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9107_low_13
NF9107_low_13
[»] chr4 (19 HSPs)
chr4 (8-236)||(55908482-55908710)
chr4 (101-229)||(1600543-1600671)
chr4 (93-222)||(547044-547173)
chr4 (122-235)||(7225751-7225864)
chr4 (111-182)||(12121314-12121385)
chr4 (122-235)||(8186959-8187072)
chr4 (111-182)||(1504968-1505039)
chr4 (111-221)||(558630-558740)
chr4 (108-228)||(3438420-3438540)
chr4 (111-182)||(1489218-1489289)
chr4 (162-227)||(1533898-1533963)
chr4 (163-229)||(1552676-1552739)
chr4 (108-147)||(570737-570776)
chr4 (165-236)||(1524397-1524468)
chr4 (174-229)||(53761692-53761747)
chr4 (93-229)||(641039-641172)
chr4 (162-208)||(1495830-1495876)
chr4 (108-222)||(6006459-6006573)
chr4 (93-182)||(532354-532443)
[»] chr2 (3 HSPs)
chr2 (8-233)||(1037418-1037643)
chr2 (14-225)||(32785535-32785743)
chr2 (114-187)||(44575459-44575532)
[»] scaffold0295 (1 HSPs)
scaffold0295 (8-236)||(375-606)
[»] chr8 (4 HSPs)
chr8 (114-228)||(18315133-18315247)
chr8 (93-195)||(32151456-32151558)
chr8 (93-147)||(17627898-17627952)
chr8 (8-69)||(17636151-17636212)
[»] chr6 (11 HSPs)
chr6 (113-236)||(7119274-7119394)
chr6 (113-236)||(7131752-7131872)
chr6 (93-228)||(6426636-6426768)
chr6 (92-231)||(6432283-6432419)
chr6 (93-220)||(6594448-6594572)
chr6 (96-222)||(9411483-9411609)
chr6 (97-222)||(7994028-7994150)
chr6 (173-222)||(6402991-6403040)
chr6 (101-149)||(6410207-6410255)
chr6 (93-149)||(6423418-6423474)
chr6 (174-222)||(8913904-8913952)
[»] chr1 (7 HSPs)
chr1 (96-222)||(9581199-9581325)
chr1 (93-236)||(19468341-19468481)
chr1 (96-152)||(29658807-29658863)
chr1 (96-222)||(9586767-9586893)
chr1 (96-152)||(29691322-29691378)
chr1 (96-152)||(29718834-29718890)
chr1 (93-152)||(30827308-30827367)
[»] chr3 (5 HSPs)
chr3 (93-222)||(51764282-51764408)
chr3 (93-234)||(514567-514708)
chr3 (100-231)||(13470581-13470709)
chr3 (173-236)||(51113700-51113763)
chr3 (162-226)||(1657374-1657438)
[»] chr5 (4 HSPs)
chr5 (108-149)||(37938092-37938133)
chr5 (93-151)||(41889393-41889451)
chr5 (93-222)||(41901377-41901506)
chr5 (76-149)||(38267378-38267451)
[»] chr7 (3 HSPs)
chr7 (173-231)||(10614715-10614773)
chr7 (167-219)||(7977712-7977764)
chr7 (109-149)||(10614794-10614834)
[»] scaffold0807 (1 HSPs)
scaffold0807 (178-230)||(1388-1440)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 55908482 - 55908710
Alignment:
Q  8 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908482 gtagataattctaatttttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 55908581  T
Q  108 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908582 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 55908681  T
Q  208 ggttagacatttgaatttagcctactgtt 236  Q
    |||||||||||||||||||||||||||||    
T  55908682 ggttagacatttgaatttagcctactgtt 55908710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 1600671 - 1600543
Alignment:
Q  101 atcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagat 200  Q
    |||||| |||||||||||| ||| |||||||||||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| |||||||||    
T  1600671 atcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagat 1600572  T
Q  201 gttgtaaggttagacatttgaatttagcc 229  Q
     || |||  ||||||||||||| ||||||    
T  1600571 tttctaaaattagacatttgaacttagcc 1600543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 547173 - 547044
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||| ||||| | ||||| ||||||| ||||||||||||||| | |||||||| || |  || | |||||||||||||||  |||||||||| ||| |    
T  547173 atgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgtttt 547074  T
Q  193 aaggagatgttgtaaggttagacatttgaa 222  Q
    |||||||||||||||| | || ||||||||    
T  547073 aaggagatgttgtaagataaggcatttgaa 547044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 7225751 - 7225864
Alignment:
Q  122 ttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttga 221  Q
    |||||||||||| |  | |||||||||||||| | ||||||||| | |||||||||  ||||| ||||| || |||||||||||||| ||||||||||||    
T  7225751 ttccccaatttggagctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttga 7225850  T
Q  222 atttagcctactgt 235  Q
    | ||| ||||||||    
T  7225851 acttatcctactgt 7225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 12121314 - 12121385
Alignment:
Q  111 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 182  Q
    |||||||| ||||||||||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||    
T  12121314 ttgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattt 12121385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 8186959 - 8187072
Alignment:
Q  122 ttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttga 221  Q
    |||||||||||||| || |||||||||||    ||| || ||||||||||||||||||||||| ||||| | | |||||||||| || ||||  ||||||    
T  8186959 ttccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttga 8187058  T
Q  222 atttagcctactgt 235  Q
    | ||||||||||||    
T  8187059 acttagcctactgt 8187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 1504968 - 1505039
Alignment:
Q  111 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 182  Q
    |||||||| |||||||||||||||||||  || |||| || |  ||||||||||||||||||||||||||||    
T  1504968 ttgcttccgttttccccaatttgcaattggttaattttagttattgccataacatatctgaagaaggtattt 1505039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 558740 - 558630
Alignment:
Q  111 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggt 210  Q
    |||||||| ||||||| |||||| |||| |||||||||| ||  || ||||| ||||| ||| ||||||||||| | ||| |||||| ||||| |||  |    
T  558740 ttgcttccgttttcccgaatttgaaattgcttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttctaacat 558641  T
Q  211 tagacatttga 221  Q
    |||||||||||    
T  558640 tagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 3438420 - 3438540
Alignment:
Q  108 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 207  Q
    ||||| |||| |||||||||||||||||  | |||||| ||||    ||| |  |||||||||| |||||| ||  | ||||| ||||||||||||||||    
T  3438420 tgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagttttaaggagatgttgtaa 3438519  T
Q  208 ggttagacatttgaatttagc 228  Q
    | ||||||||||||| |||||    
T  3438520 gattagacatttgaacttagc 3438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 1489218 - 1489289
Alignment:
Q  111 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 182  Q
    ||||| || ||||||||||||||||||| ||| ||||||  |  ||| ||||||||||||||||||||||||    
T  1489218 ttgctgcccttttccccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattt 1489289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  162 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttag 227  Q
    |||||||||||||||||||| || | ||| ||||||||||||||||| | | ||||||||| ||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 1552676 - 1552739
Alignment:
Q  163 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcc 229  Q
    |||||| || |||||||||||||||||| ||||   |||||||||| ||||||||||||| ||||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagcc 1552739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 570776 - 570737
Alignment:
Q  108 tgtttgcttccattttccccaatttgcaatttcttgattt 147  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  570776 tgtttgcttccattttccccaatttgcaactacttgattt 570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 1524397 - 1524468
Alignment:
Q  165 tatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgtt 236  Q
    |||||||||||||||||  | | ||| ||||||||||||||||  |||| |||||||| |||||| ||||||    
T  1524397 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgtt 1524468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 53761692 - 53761747
Alignment:
Q  174 aaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcc 229  Q
    ||||||||||| ||||| ||||||||||||||||  |||| |||||||| ||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagcc 53761747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 641172 - 641039
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||||||| ||| ||||||||||||| ||||| ||||| |  || |||||||||||    ||  || || ||||||||| |   |||| | ||||| |    
T  641172 atgaaaacataataatgtttgcttccatgttcccaaatttacggttgcttgatttgagtgattgtgatcacgtatctgaagga---atttttcaagtttt 641076  T
Q  193 aaggagatgttgtaaggttagacatttgaatttagcc 229  Q
    ||||| ||||||||| |||||||||||||| ||||||    
T  641075 aaggatatgttgtaatgttagacatttgaacttagcc 641039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 1495830 - 1495876
Alignment:
Q  162 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaag 208  Q
    |||||||||||||||||||| || | ||| |||||||||||||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaag 1495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 6006573 - 6006459
Alignment:
Q  108 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 207  Q
    ||||||||||  ||| ||||||||| ||| |  | ||||||||||| ||| |  |||||||||| |||||| ||  | ||||| |||||| |||| ||||    
T  6006573 tgtttgcttcagtttgccccaatttacaactcttggatttgagctcttgcgagtacatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaa 6006474  T
Q  208 ggttagacatttgaa 222  Q
    | |||||||||||||    
T  6006473 gattagacatttgaa 6006459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 532443 - 532354
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 182  Q
    |||||| ||| ||| ||||||| ||||||||||||||||| ||  | || || |||||||  ||  ||||||||||| ||||||||||||    
T  532443 atgaaagcattataatgtttgcatccattttccccaatttacatatgctggacttgagctattgttataacatatctaaagaaggtattt 532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 1037418 - 1037643
Alignment:
Q  8 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1037418 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttaacttgcaattttcagttactaaatgaaaacatcatat 1037517  T
Q  108 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1037518 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaa 1037617  T
Q  208 ggttagacatttgaatttagcctact 233  Q
    ||||||||||||||||||||||||||    
T  1037618 ggttagacatttgaatttagcctact 1037643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 32785535 - 32785743
Alignment:
Q  14 aattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatattgtttg 113  Q
    ||||||||||||| |||||||| |||| ||| || |||||||||||  |||||||| ||| |||||| |  ||||  | |||||| |||||   |||||     
T  32785535 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgtttt 32785634  T
Q  114 cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttag 213  Q
    |||| |||||  ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| |||| ||||    
T  32785635 cttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattag 32785731  T
Q  214 acatttgaattt 225  Q
    ||||||||||||    
T  32785732 acatttgaattt 32785743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 44575459 - 44575532
Alignment:
Q  114 cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa 187  Q
    |||||||||| |||||||||||||| |||||||||||||  ||| || |||||||   ||||| ||||||||||    
T  44575459 cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa 44575532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 375 - 606
Alignment:
Q  8 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  375 gtagataattctaattcttcaatggattgtgttttaaaccatcaattaaagtcacttcatttagcttgcaattttcagttactaaatgaaaacatcatat 474  T
Q  108 tgtttgcttccattttc---cccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttg 204  Q
    |||||      ||||     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  475 tgtttaagagtatttgtgatcccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttg 574  T
Q  205 taaggttagacatttgaatttagcctactgtt 236  Q
    ||||| ||||||||||||||||||||||||||    
T  575 taaggctagacatttgaatttagcctactgtt 606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 18315133 - 18315247
Alignment:
Q  114 cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttag 213  Q
    |||||||||||||||||||||| || ||||||||||||| |||| |||||||| ||||||||||||||||| ||||| || | || |||| | || ||||    
T  18315133 cttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattag 18315232  T
Q  214 acatttgaatttagc 228  Q
    ||| ||||| |||||    
T  18315233 acagttgaacttagc 18315247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 32151558 - 32151456
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||| ||||||| | ||||||||||||||||||| ||||||||| | ||||||||||| |  ||||||||||||||||||||||| |||||| ||||| |    
T  32151558 atgataacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagtttt 32151459  T
Q  193 aag 195  Q
    |||    
T  32151458 aag 32151456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 17627898 - 17627952
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgattt 147  Q
    |||||||||||| | ||||||||||||||||||||||||||||| | ||||||||    
T  17627898 atgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 17636151 - 17636212
Alignment:
Q  8 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 69  Q
    ||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||| ||||||||    
T  17636151 gtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccattt 17636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 7119394 - 7119274
Alignment:
Q  113 gcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggtta 212  Q
    |||||| ||||||||||||| ||| ||||||||||||   | ||| |||||||||||||||   |||||||| ||||| |||||||||||| |||| |||    
T  7119394 gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagatta 7119298  T
Q  213 gacatttgaatttagcctactgtt 236  Q
     ||||||||| |||||| ||||||    
T  7119297 aacatttgaacttagcccactgtt 7119274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 7131872 - 7131752
Alignment:
Q  113 gcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggtta 212  Q
    |||||| ||||||||||||| ||| ||||||||||||   | ||| |||||||||||||||   |||||||| ||||| |||||||||||| |||| |||    
T  7131872 gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagatta 7131776  T
Q  213 gacatttgaatttagcctactgtt 236  Q
     ||||||||| |||||| ||||||    
T  7131775 aacatttgaacttagcccactgtt 7131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 6426768 - 6426636
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||  | ||||||||||     |||| | | ||||||||||   |||||||||||||| |    
T  6426768 atgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaag---gtatttgtgaagtttt 6426672  T
Q  193 aaggagatgttgtaaggttagacatttgaatttagc 228  Q
    ||||| |||||||||| ||| ||||||||| |||||    
T  6426671 aaggaaatgttgtaagcttaaacatttgaacttagc 6426636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 6432419 - 6432283
Alignment:
Q  92 aatgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttc 191  Q
    |||||||  |||||| |||||||||||||||||||||||||||||  |||||||||| | |  || |||   |||    | |||||||||||| |||||     
T  6432419 aatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatttgcgttggtgtcatcgtata---aatgaaggtatttgtcaagttt 6432323  T
Q  192 taaggagatgttgtaaggttagacatttgaatttagccta 231  Q
    ||||||||||||||||  ||| ||||||||| ||||||||    
T  6432322 taaggagatgttgtaaacttaaacatttgaacttagccta 6432283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 6594448 - 6594572
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    ||||||||||||||||||||||||| |||||||||| |||| |  | ||||||||||| |  | | || | ||||||   |||||||||||| ||||| |    
T  6594448 atgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgaggttttccgatcaaatatct---gaaggtatttgtcaagtttt 6594544  T
Q  193 aaggagatgttgtaaggttagacatttg 220  Q
    ||||||||||| |||| ||| |||||||    
T  6594545 aaggagatgttataagattacacatttg 6594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 9411609 - 9411483
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaag 195  Q
    ||||||||| |  |||||||||||||||||||||||||||  | ||||||||||||   ||   |||||||||| | ||||||||||   | ||| ||||    
T  9411609 aaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaag 9411510  T
Q  196 gagatgttgtaaggttagacatttgaa 222  Q
    ||||||| ||||  |||||||||||||    
T  9411509 gagatgtggtaacattagacatttgaa 9411483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 7994028 - 7994150
Alignment:
Q  97 aaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaagg 196  Q
    ||||||||||||||||||| |||||||||| ||||||||  | || |||||||  || ||| ||   ||||||   |||||||||||| | ||| |||||    
T  7994028 aaacatcatattgtttgctaccattttcccaaatttgcagatgctcgatttgaattcttgcaatggtatatct---gaaggtatttgttacgttttaagg 7994124  T
Q  197 agatgttgtaaggttagacatttgaa 222  Q
    | |||||||||| | || ||||||||    
T  7994125 aaatgttgtaagatcaggcatttgaa 7994150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 6403040 - 6402991
Alignment:
Q  173 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaa 222  Q
    |||||||||||| ||||| ||||||||||||||||  |||| ||||||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaa 6402991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 6410255 - 6410207
Alignment:
Q  101 atcatattgtttgcttccattttccccaatttgcaatttcttgatttga 149  Q
    ||||| ||||||||||||||||| |||||||| ||| | ||||||||||    
T  6410255 atcattttgtttgcttccatttttcccaatttacaactacttgatttga 6410207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 6423474 - 6423418
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttga 149  Q
    |||||| ||||||| ||||||||||||||||||| |||||  || | ||||||||||    
T  6423474 atgaaatcatcataatgtttgcttccattttccctaatttaaaactacttgatttga 6423418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 8913904 - 8913952
Alignment:
Q  174 aaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaa 222  Q
    ||||||||||| ||||| |||| |||||||||||| ||| |||||||||    
T  8913904 aaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaa 8913952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 9581325 - 9581199
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaag 195  Q
    ||||||||||| |||||||||| |||||||||||||||||  | |||||| || ||   |||  |||||||||| ||  |||||||||| ||||| |||     
T  9581325 aaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaa 9581226  T
Q  196 gagatgttgtaaggttagacatttgaa 222  Q
     ||||||||| || |||||||||||||    
T  9581225 aagatgttgtcagattagacatttgaa 9581199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 19468341 - 19468481
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||||||||||| |||||||||||||||| |||||||||||  | |||||||||| ||| ||| |  |||||||    ||||| |||||| ||||| |    
T  19468341 atgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatc---ggaaggcatttgtcaagtttt 19468437  T
Q  193 aaggagatgttgtaaggttagacatttgaatttagcctactgtt 236  Q
    |||||| |||| |||  |||| ||||| || |||||| ||||||    
T  19468438 aaggaggtgttctaatattaggcatttaaacttagcccactgtt 19468481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 29658807 - 29658863
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 152  Q
    |||||||||||||||||||||||||||||||||| ||| || | |||||||||||||    
T  29658807 aaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagct 29658863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 9586893 - 9586767
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaag 195  Q
    ||||||||||| |||||||||| |||||||||||||||||  | |||||| || ||   |||  |||||||||| ||  |||||||||| ||||| ||      
T  9586893 aaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttaca 9586794  T
Q  196 gagatgttgtaaggttagacatttgaa 222  Q
     ||||||||| || |||||||||||||    
T  9586793 aagatgttgtcagattagacatttgaa 9586767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 29691322 - 29691378
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 152  Q
    ||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||    
T  29691322 aaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagct 29691378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 29718834 - 29718890
Alignment:
Q  96 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 152  Q
    ||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||    
T  29718834 aaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagct 29718890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 30827367 - 30827308
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 152  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  30827367 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 30827308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 51764282 - 51764408
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||| ||||||| ||||||||||||||||||||||||||||  | |||||||| |  || ||| ||  |||||||    ||||| | ||||||||| |    
T  51764282 atgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatct---aaaggtgtctgtgaagtttt 51764378  T
Q  193 aaggagatgttgtaaggttagacatttgaa 222  Q
    ||||||||||| |||| |||| ||||||||    
T  51764379 aaggagatgttctaagattaggcatttgaa 51764408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 514567 - 514708
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    |||||||| | ||| |||||||||| |||||||| ||||||||  |  ||||||||||||  ||  |||||||||||||  || |||| ||| ||||| |    
T  514567 atgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagtttt 514666  T
Q  193 aaggagatgttgtaaggttagacatttgaatttagcctactg 234  Q
    || |||||| | |||| |||| |||||||| |||||| ||||    
T  514667 aaagagatggtctaagattaggcatttgaacttagcccactg 514708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 13470581 - 13470709
Alignment:
Q  100 catcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggaga 199  Q
    ||||||| |||||||||||| |||||||||||||||  | ||||||||||  |  ||| ||  | ||||   | ||||||||||| ||||| |||||| |    
T  13470581 catcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatc---aaaaggtatttgtcaagttttaaggata 13470677  T
Q  200 tgttgtaaggttagacatttgaatttagccta 231  Q
    ||||||||| |||| |||||||| ||||||||    
T  13470678 tgttgtaagattaggcatttgaacttagccta 13470709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 51113700 - 51113763
Alignment:
Q  173 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgtt 236  Q
    |||||||||||| ||||| ||| ||||||||||||  |||| |||||||| ||||| |||||||    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgtt 51113763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 1657438 - 1657374
Alignment:
Q  162 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaattta 226  Q
    ||||||||||||||||||||  | | ||| ||| || |||||||||  |||||||||||||||||    
T  1657438 acatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaattta 1657374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 37938133 - 37938092
Alignment:
Q  108 tgtttgcttccattttccccaatttgcaatttcttgatttga 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  37938133 tgtttgcttccattttccccaatctgcaatttcttgatttga 37938092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 41889393 - 41889451
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagc 151  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||  | ||||||||||||    
T  41889393 atgaagacatcataatgtttgcttccattttccctaatttgcagctacttgatttgagc 41889451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 41901377 - 41901506
Alignment:
Q  93 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 192  Q
    ||||| |||||| | |||| |||||||||||||||||||||||  | ||||||||||||   ||   |  ||||| |||||||||||||  | ||||| |    
T  41901377 atgaagacatcacaatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagtttt 41901476  T
Q  193 aaggagatgttgtaaggttagacatttgaa 222  Q
    |||||  ||||||||  |||||||||||||    
T  41901477 aaggatgtgttgtaacattagacatttgaa 41901506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 38267378 - 38267451
Alignment:
Q  76 caattttcagttactaaatgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttga 149  Q
    ||||||||  |||| | |||||||| ||||| | | ||||||||||||||||| | ||||||||||| ||||||    
T  38267378 caattttcgtttacaagatgaaaacctcatactatatgcttccattttccccagtctgcaatttcttaatttga 38267451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 10614773 - 10614715
Alignment:
Q  173 gaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagccta 231  Q
    |||||||||||| ||||| |||||| |||||||||| |||| |||||||| ||||||||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagccta 10614715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 7977764 - 7977712
Alignment:
Q  167 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacattt 219  Q
    ||||||||||||||| || ||||| ||||||||||||||||  ||||||||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacattt 7977712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 10614834 - 10614794
Alignment:
Q  109 gtttgcttccattttccccaatttgcaatttcttgatttga 149  Q
    ||||||||||| |||||||||||||||| | ||||||||||    
T  10614834 gtttgcttccaatttccccaatttgcaactgcttgatttga 10614794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 1388 - 1440
Alignment:
Q  178 tatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcct 230  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||| |||||||    
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcct 1440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University