View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9107_low_4 (Length: 790)

Name: NF9107_low_4
Description: NF9107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9107_low_4
NF9107_low_4
[»] chr1 (2 HSPs)
chr1 (19-559)||(38630731-38631271)
chr1 (558-777)||(38630474-38630701)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 38631271 - 38630731
Alignment:
Q  19 catgtacgcgcttgtattgtttttggaatgcagttggggacaacggtatctgcatacggatgttggaaggttttgaacaaacctcctccgcttcaaattg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38631271 catgtacgcgcttgtattgtttttggaatgcagttggggacaacggtatctgcatacggatgttggaaggttttgaacaaacctcctccgcttcaaaatg 38631172  T
Q  119 gggaaatgacagagtttctgagaagggatttggaaactaaaggttccatcttcacgtttcaaagccgctatactgaagaggagtttgaacaaacagcagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38631171 gggaaatgacagagtttctgagaagggatttggaaactaaaggttccatcttcacgtttcaaagccgctatgctgaagaggagtttgaacaaacagcagg 38631072  T
Q  219 attctggggttacctcatgcaaattacatatcaggttaagtttcttccagaacattaattatgatgaatatttgttttctaatttgtcaccaatattcta 318  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38631071 attctggggttacctcatgcaaattacatttcaggttaagtttcttcaagaacattaattatgatgaatatttgttttctaatttgtcaccaatattcta 38630972  T
Q  319 atccagttgaaactgatattctgcatttggcagaccagtgcaggggctgtcatattaacagatattgtcttttggtgcgttattgtcccatttttatcca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38630971 atccagttgaaactgatattctgcatttggcagaccagtgcagggtctatcatattaacagatattgtcttttggtgcgttattgtcccatttttatcca 38630872  T
Q  419 tttctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaatatt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38630871 tttctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaatatt 38630772  T
Q  519 tgcatgatagattgataattgatctttggaacttggaagta 559  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  38630771 tgtatgatagattgataattgatctttggaacttggaagta 38630731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 558 - 777
Target Start/End: Complemental strand, 38630701 - 38630474
Alignment:
Q  558 tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggataccatgctgaacaatcttgtaagtaacacgctcactagaa------- 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||            
T  38630701 tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggatactatgctgaacaatcttgtaagtaacacactcactagagaagtaga 38630602  T
Q  651 -cataaaactaagcactaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt 749  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38630601 gcataaaactaagcaccaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt 38630502  T
Q  750 ggtttagaatagcatattttgtgctctg 777  Q
    ||||||||||||||||||||||||||||    
T  38630501 ggtttagaatagcatattttgtgctctg 38630474  T

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