View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9107_low_6 (Length: 630)
Name: NF9107_low_6
Description: NF9107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9107_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 54471386 - 54471767
Alignment:
| Q |
20 |
agttggaaaagaaacacgttttcttctgggtgtatctattaccatgcacattcaccttggtcatcgctttcttttgagaannnnnnnnnnnnnnnnnncc |
119 |
Q |
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| T |
54471386 |
agttggaaaagaaacacgttttcttctgggtgtatctattaccatgcacat-caccttggtcatcgctttcttttgagaatcctcctcctcctcctgccc |
54471484 |
T |
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| Q |
120 |
ttttctctcacccttataaggtaacattacattacatta-tcccttcttcttaatctctctct--------------ttcaaaaataactaactaattag |
204 |
Q |
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| T |
54471485 |
ttttctctcacc-ttataaggtaacattaaatttcattaatcccttcttcttaatctctctctctctctctctctctttcaaaaataactaact---tag |
54471580 |
T |
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| Q |
205 |
atccatgcaataagatgaacatgtgttattctaacatattttattattacaggtaggtttgagaatacatgatcgatcggggtcaatatttgagggagct |
304 |
Q |
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| T |
54471581 |
atccatgcaataagatgaacatgtgttatactaacatattttattattacaggtaggtttgagaatacatgatcgatcggggtcaatatttgagggagct |
54471680 |
T |
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| Q |
305 |
gagtgtgacttcttcagatcattctttataacaatgtcttctatttcccaagaatcttctccaggaccagacgctcaaaattcgtct |
391 |
Q |
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| T |
54471681 |
gagtgtgacttcttcagatcattctttataacaatgtcttctatttcccaagaatcttctccaggaccagacgctcaaaattcgtct |
54471767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 54471927 - 54471978
Alignment:
| Q |
551 |
tctccgtctccgactccaccttctaacacttccccatctcaaccatcacaat |
602 |
Q |
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| T |
54471927 |
tctccgtctccgactccaccttctaacacttccccatctcaaccatcacaat |
54471978 |
T |
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