View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9107_low_7 (Length: 557)
Name: NF9107_low_7
Description: NF9107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9107_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 5657010 - 5657468
Alignment:
| Q |
17 |
acttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5657010 |
acttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttattt |
5657109 |
T |
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| Q |
117 |
ttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttgttatgacccggcagattgggtta |
216 |
Q |
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| T |
5657110 |
ttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaaatccgcctttgttatgacccggcagattgggtta |
5657209 |
T |
|
| Q |
217 |
aattttcttcctaaaaatggttcctttggtaaaatgtctggaagcactactctttttatgagtcgaaggggaaacttgtattgtaatggaacttataggg |
316 |
Q |
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| T |
5657210 |
aattttcttcctaaaaatggttcctttggtaaaatgtctggaagcactactctttttataagtcgaaggggaaacttgtattgtaatggaacttataggg |
5657309 |
T |
|
| Q |
317 |
tttcgtggtcgtggcggtgtcgggatgtcattctctcaggtgctggccaggatccacttgtacctaccgctcaatggcggtttgttctgattcctttctt |
416 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5657310 |
tttcgtagtggtggcggtgtcgggatgtcattctctcaggtgctggccaggatccacttgtacctaccgctcaatggcggtttgttctgattcctttctt |
5657409 |
T |
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| Q |
417 |
ctggagggacttggtgttctttggttcggtgggtgctttcttggcaggtctttcccggc |
475 |
Q |
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| T |
5657410 |
ctggagggacttggtgttctttggttcggtgggtgctttcttggcaggtctttcccggc |
5657468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 5718752 - 5718884
Alignment:
| Q |
17 |
acttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttattt |
116 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
5718752 |
acttttgaggatcaaaagtagcagctaa---aacactttctgctgcaaggcataactatattatatgaacttcaattatgaatcactaattactttcttt |
5718848 |
T |
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| Q |
117 |
ttaagttcttgaaatcatttttaaatgagtttttaa |
152 |
Q |
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| T |
5718849 |
ttaagttcttgaaatcatttttaaatgagtttttaa |
5718884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 5686611 - 5686742
Alignment:
| Q |
17 |
acttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatctgaacttcgattatgaatcactaattactttattt |
116 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
5686611 |
acttttgaggatcaaaagtagcagctaa---aacactttctgctgcaag-cataactatattatatgaacttcaattatgaatcactaattactttcttt |
5686706 |
T |
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| Q |
117 |
ttaagttcttgaaatcatttttaaatgagtttttaa |
152 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5686707 |
ttaagttcttgaaatcatttttaaatgagtttttaa |
5686742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 17036469 - 17036439
Alignment:
| Q |
120 |
agttcttgaaatcatttttaaatgagttttt |
150 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17036469 |
agttcttgaaatcatttttaaatgagttttt |
17036439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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