View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9108_low_2 (Length: 302)
Name: NF9108_low_2
Description: NF9108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9108_low_2 |
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| [»] scaffold0683 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 41122057 - 41122206
Alignment:
| Q |
31 |
cacattagatcttgactattgcatttgttgtctgtattatatttcaatttttagcttcatcatgat--------ctttcaagttctatcattggttcaat |
122 |
Q |
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| T |
41122057 |
cacattaaatcttgactattgcatttgttgtttgtattatatttcaatttttagcttcatcatgatggtctaatctttcaagttctatcattggttcaat |
41122156 |
T |
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| Q |
123 |
atgctaatgatagaagtatcttcatcatgatggtctaatctttagcatat |
172 |
Q |
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| T |
41122157 |
atgctaatgatagaagtatcttcatcatgatggtctaatctttagcatat |
41122206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 41122207 - 41122304
Alignment:
| Q |
200 |
ccatgatcattggttcaaagtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcattgcaattgtcatctctctgctcct |
297 |
Q |
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| T |
41122207 |
ccatgatcattggttcaatgtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcatcgcaattgtcatctctctgctcct |
41122304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 18984826 - 18984724
Alignment:
| Q |
191 |
aaccttgaaccatgatcattggttcaaagtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcattgcaattgtcatctctc |
290 |
Q |
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| T |
18984826 |
aaccttgaaccatgatcattgattcaatgaaattgaaaataagacttgcatttaaaaagttgcaa--aaatgataaattgcattgcaattgtcatctccc |
18984729 |
T |
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| Q |
291 |
tgctc |
295 |
Q |
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| T |
18984728 |
tgctc |
18984724 |
T |
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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 39442397 - 39442502
Alignment:
| Q |
190 |
taaccttgaaccatgatcattggttcaaagtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcattgcaattgtcatctct |
289 |
Q |
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| T |
39442397 |
taaccttgaaccatgatcattggttcaatgtaattgaaaataagacttgcatttaaaaacttgtaa--aaatgataaattgcattgcaattgtcatctct |
39442494 |
T |
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| Q |
290 |
ctgctcct |
297 |
Q |
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| T |
39442495 |
ctgctcct |
39442502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 44198312 - 44198209
Alignment:
| Q |
190 |
taaccttgaaccatgatcattggttcaaagtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcattgcaattgtcatctct |
289 |
Q |
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| T |
44198312 |
taaccttgaaccatgatcattggttcaatgaaatagaaaataagacttgcatttaaaaagttgcaa--atatgataaattgcattgcaattgtcatctcc |
44198215 |
T |
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| Q |
290 |
ctgctc |
295 |
Q |
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| T |
44198214 |
ctgctc |
44198209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0683 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0683
Description:
Target: scaffold0683; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 6006 - 5903
Alignment:
| Q |
190 |
taaccttgaaccatgatcattggttcaaagtaattgaaaataagacttgcatttaaaaacttgtaagtaaatgataaattgcattgcaattgtcatctct |
289 |
Q |
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| T |
6006 |
taaccttcaaccatgatcattgattcaatgaaatagaaaataagacttgcatttaaaaagttgcaa--aaatgataaattgctttgcaattgtcatctcc |
5909 |
T |
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| Q |
290 |
ctgctc |
295 |
Q |
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|||||| |
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| T |
5908 |
ctgctc |
5903 |
T |
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