View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9108_low_5 (Length: 241)

Name: NF9108_low_5
Description: NF9108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9108_low_5
NF9108_low_5
[»] chr5 (4 HSPs)
chr5 (18-224)||(9014104-9014310)
chr5 (112-194)||(17626805-17626886)
chr5 (112-203)||(5159012-5159101)
chr5 (112-200)||(28812668-28812754)
[»] chr3 (10 HSPs)
chr3 (18-224)||(55062683-55062889)
chr3 (25-200)||(26959774-26959951)
chr3 (112-200)||(38100837-38100923)
chr3 (112-194)||(21218329-21218410)
chr3 (112-194)||(23602286-23602367)
chr3 (130-194)||(37055960-37056024)
chr3 (112-186)||(54411485-54411558)
chr3 (115-191)||(10478027-10478103)
chr3 (25-81)||(10477936-10477992)
chr3 (138-202)||(54411982-54412046)
[»] chr8 (3 HSPs)
chr8 (18-212)||(13303873-13304068)
chr8 (20-215)||(40227188-40227383)
chr8 (115-200)||(35011498-35011581)
[»] chr4 (6 HSPs)
chr4 (112-200)||(20503874-20503960)
chr4 (112-194)||(38383141-38383222)
chr4 (112-194)||(34617379-34617460)
chr4 (112-194)||(48401365-48401446)
chr4 (131-194)||(56362519-56362582)
chr4 (112-194)||(47182659-47182740)
[»] chr1 (1 HSPs)
chr1 (112-194)||(46908015-46908096)
[»] chr7 (4 HSPs)
chr7 (115-191)||(48226865-48226940)
chr7 (112-194)||(7702371-7702452)
chr7 (112-194)||(46021245-46021326)
chr7 (138-202)||(48227437-48227501)
[»] chr6 (1 HSPs)
chr6 (112-194)||(16200268-16200349)
[»] chr2 (4 HSPs)
chr2 (112-194)||(3097052-3097133)
chr2 (112-194)||(41055920-41056001)
chr2 (112-194)||(25269756-25269837)
chr2 (112-194)||(13332338-13332419)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 9014310 - 9014104
Alignment:
Q  18 gctttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgtannnnnnnaacata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||    
T  9014310 gctttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgaccgactaggattgtatttttttaacata 9014211  T
Q  118 tatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaattcagagcaagctcgt 217  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  9014210 tatattgatttataaaaatacaattgcttttggattcaaatttaagaaatggtgtttttgtcattgttggaaaaattggaaaaattcacagcaagctcgt 9014111  T
Q  218 tccatgt 224  Q
    |||||||    
T  9014110 tccatgt 9014104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 17626886 - 17626805
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||    
T  17626886 aacatatagagtgattta-aaaaattcaattgattttggaatcacatttaataaagggtatttttgacattgttggaaaaatt 17626805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 5159012 - 5159101
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaatt 203  Q
    |||||||||||||||||| | | |||||||||||||||| ||||| ||| | ||||||| |||||||||||||| ||||||||| |||||||    
T  5159012 aacatatatattgattta-atacatgcaattgattttgggttcaattttcaaaaagggtgtttttgtcattgtt-gaaaaattgaaaaaatt 5159101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 28812668 - 28812754
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaa 200  Q
    |||||||||||||||||| | |||| || ||||||||||||||||  || ||||||||| |||||||||||||| ||||||||| ||||    
T  28812668 aacatatatattgattta-ataaatacatttgattttggattcaatattcagaaagggtgtttttgtcattgtt-gaaaaattgaaaaa 28812754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 55062889 - 55062683
Alignment:
Q  18 gctttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgtannnnnnnaacata 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||    
T  55062889 gctttgaaaaatggatgtcaaccattgaatttactttgaagcttttgaatggctgagatttgcaataaatgacccactaggattgtatttttttaacata 55062790  T
Q  118 tatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaattcagagcaagctcgt 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  55062789 tatattgatttataaaaatacaattgattttggattcaaatttaagaaatggtgtttttgtcattgttggaaaaattggaaaaattcacagcaagctcgt 55062690  T
Q  218 tccatgt 224  Q
    |||||||    
T  55062689 tccatgt 55062683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 26959951 - 26959774
Alignment:
Q  25 aaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaa--taagtgacccactaggattgtannnnnnnaacatatatat 122  Q
    |||||| |||||||||||||||| ||||  |||| ||||||||||||||||||||||   ||  ||||||||||  ||| ||       || ||||||||    
T  26959951 aaaatgaatgtcaaccattggatgtactaagaagattttgaatggctgagatttgcaggttacttgacccactaaaattctattttttaaaaatatatat 26959852  T
Q  123 tgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaa 200  Q
    ||||||  ||||||  ||||||||||||| | | |||||| ||||||| |||||| || |||||||||||||| ||||    
T  26959851 tgattttaaaaaattaaattgattttggaattacatttaacaaagggtgtttttggcaatgttggaaaaattgaaaaa 26959774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 38100837 - 38100923
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaa 200  Q
    |||||||||||||||||| | ||||||| |||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| ||||    
T  38100837 aacatatatattgattta-ataaatgcatttgattttggattcaattttcagaaagggtgtttttgtcattgtt-gaaaaattgaaaaa 38100923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 21218410 - 21218329
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  21218410 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 21218329  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 23602367 - 23602286
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  23602367 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 23602286  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 37055960 - 37056024
Alignment:
Q  130 taaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    ||||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  37055960 taaaaattcaattgattttggaatcacatttaacaaagggtgtttttgacattgttggaaaaatt 37056024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 54411485 - 54411558
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttg 186  Q
    ||||| |||||||||||| | ||||||| |||||||||||||||| ||| ||||||| | ||||||||| |||||    
T  54411485 aacatgtatattgattta-ataaatgcatttgattttggattcaattttcagaaaggatgtttttgtcaatgttg 54411558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 10478027 - 10478103
Alignment:
Q  115 atatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaa 191  Q
    ||||||||||||||  ||||||  ||||||||||||| | | |||||| ||||||| |||||| || ||||||||||    
T  10478027 atatatattgattttaaaaaatcaaattgattttggaattacatttaacaaagggtgtttttggcaatgttggaaaa 10478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 10477936 - 10477992
Alignment:
Q  25 aaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgca 81  Q
    |||||||||||||| ||||||||  |||  |||| |||||||||||| |||||||||    
T  10477936 aaaatggatgtcaatcattggatgcactaagaagattttgaatggcttagatttgca 10477992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 54411982 - 54412046
Alignment:
Q  138 caattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaat 202  Q
    |||||||||||| | | | |||||| ||||||| |||||| || |||||||||||||| ||||||    
T  54411982 caattgattttgtaattacatttaacaaagggtgtttttggcaatgttggaaaaattgaaaaaat 54412046  T

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Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 13303873 - 13304068
Alignment:
Q  18 gctttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgtannnnnnn-aacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||    
T  13303873 gctttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgcatttttttgaacat 13303972  T
Q  117 atatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaattcagagcaag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13303973 atatattgatttataaaaatgcaattgattttggattcaaatttaaaaaagggtgtttttgtcattgttggaaaaattggaaaaattcacagcaag 13304068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 40227383 - 40227188
Alignment:
Q  20 tttgaaaaatggatgtcaaccattggatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgtannnnnnnaacatata 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  40227383 tttgaaaaatggatgtcaaccattgaatttactttgaagcttttgaatggctgagatttgcaataagtgacccactaggattgtatttttttaacatata 40227284  T
Q  120 tattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaattcagagcaagctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||| |||||||||    
T  40227283 tattgatttataaaaatgcaattgattttggattcaaatttaagaaaggatgtttttggcattgttggaaaaactggaaaaattcatagcaagctc 40227188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 35011581 - 35011498
Alignment:
Q  115 atatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaa 200  Q
    ||||||||||||||| | ||||||| |||||||||||||||| ||| |||||| || |||||||||||||| ||||||||| ||||    
T  35011581 atatatattgattta-ataaatgcatttgattttggattcaattttcagaaagagtgtttttgtcattgtt-gaaaaattgaaaaa 35011498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 20503960 - 20503874
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaa 200  Q
    |||||||||||||||||| | ||||||| |||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| ||||    
T  20503960 aacatatatattgattta-ataaatgcatttgattttggattcaattttcagaaagggtgtttttgtcattgtt-gaaaaattgaaaaa 20503874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 38383222 - 38383141
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||    
T  38383222 aacatatagaatgattta-aaaaattcaattgattttggaatcaaatttaataaagggtgtttttgacattgttggaaaaatt 38383141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 34617460 - 34617379
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  34617460 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 34617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 48401365 - 48401446
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  48401365 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 48401446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 56362519 - 56362582
Alignment:
Q  131 aaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  56362519 aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 56362582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 47182740 - 47182659
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||| |||||  || |||||| ||||| | |||||| ||||||||||||||||    
T  47182740 aacatatagaatgattta-aaaaattcaattgatcttggaaacacatttaataaaggatgtttttgacattgttggaaaaatt 47182659  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 46908096 - 46908015
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||||| ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  46908096 aacatatataatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 46908015  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 48226865 - 48226940
Alignment:
Q  115 atatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaa 191  Q
    ||||||||||||||| | ||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||| ||||    
T  48226865 atatatattgattta-ataaatgcatttgattttggattcaatttttagaaagggtgtttttgtcattgttgaaaaa 48226940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 7702452 - 7702371
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  7702452 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 7702371  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 46021245 - 46021326
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  46021245 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 46021326  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 48227437 - 48227501
Alignment:
Q  138 caattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaattggaaaaat 202  Q
    |||||||||||| | | | |||||| ||||||| |||||| || |||||||||||||| ||||||    
T  48227437 caattgattttgtaattacatttaacaaagggtgtttttggcaatgttggaaaaattgaaaaaat 48227501  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 16200349 - 16200268
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  16200349 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 16200268  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 3097052 - 3097133
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| ||| |||||| ||||||| ||||||  |||||||||||||||    
T  3097052 aacatatagaatgattta-aaaaattcaattgattttggaatcacatttaataaagggtgtttttgatattgttggaaaaatt 3097133  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 41055920 - 41056001
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| ||| |||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||    
T  41055920 aacatatagaatgattta-aaaaattcaactgattttggaatcacatttaataaagggtgtttttgacattgttggaaaaatt 41056001  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 25269756 - 25269837
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||  | ||| |||||| ||||||| |||||| ||||||||||||||||    
T  25269756 aacatatagaatgattta-aaaaattcaattgattttaaaatcacatttaataaagggtgtttttggcattgttggaaaaatt 25269837  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 13332338 - 13332419
Alignment:
Q  112 aacatatatattgatttataaaaatgcaattgattttggattcaaatttaagaaagggtatttttgtcattgttggaaaaatt 194  Q
    |||||||| | ||||||| |||||| |||||||||||||| | | |||||| ||| ||| ||||||  |||||||||||||||    
T  13332338 aacatatagaatgattta-aaaaattcaattgattttggaataacatttaataaaaggtgtttttgatattgttggaaaaatt 13332419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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