View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9108_low_7 (Length: 237)
Name: NF9108_low_7
Description: NF9108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9108_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 11869707 - 11869606
Alignment:
| Q |
18 |
aaaattccttgattagctggtgttcgcaaatcaattactctaaaattcaatcgtgtatcctgattcacgcgaacaagttgtttgccagcctgcgtccatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
11869707 |
aaaattccttgattagctggtgttcgcaaatcaattactctaaaattcaatcgtgtatcctgattcacgtgaacaagttgttcgccagcctgcgtccatc |
11869608 |
T |
|
| Q |
118 |
ac |
119 |
Q |
| |
|
|| |
|
|
| T |
11869607 |
ac |
11869606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 11869538 - 11869499
Alignment:
| Q |
186 |
gataaaccgaatctatatacaacaaacgtagaagaacaca |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11869538 |
gataaaccgaatctatatacaataaacgtagaagaacaca |
11869499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 3104294 - 3104202
Alignment:
| Q |
18 |
aaaattccttgattagctggtgttcgcaaatcaattactctaaaattcaatcgtgtatcctgattcacgcgaacaagttgtttgccagcctgc |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
3104294 |
aaaattccttgatttgctggtgttcgcaggtcaagtactctaaaattcaatcgtgtatcctgattcacacgaacaagttgttcaccagcctgc |
3104202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University