View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9109_high_2 (Length: 325)
Name: NF9109_high_2
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 7891247 - 7891077
Alignment:
| Q |
1 |
caaattaacaaaaaataaatcaagcatttaccaattcatgtaaaatgattgagctctctcagcagctaacttgtcttccgtagagttgctaaatggttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7891247 |
caaattaacaaaaaataaatcaagcatttaccaattcatgtaaaatgattgagttctctcagcagctaacttgtcttccgtagagttgctaaatggttca |
7891148 |
T |
|
| Q |
101 |
taccatatagcattcatagcaattccaatttttcctccctgatttttctgatatttgagcaatacattaat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7891147 |
taccatatagcattcatagcaattccaatttttcctccctgatttttctgatatttgagcaatacattaat |
7891077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 7890943 - 7890858
Alignment:
| Q |
225 |
tactctagcttagcccttgggccgaccctcattacgcgcatgtgccattttagtatagtcgagagtgggatttcatttaagttttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7890943 |
tactctagcttagcccttgggccgaccctcattacgcgcatgtgccattttagtatagtcgagagtgggatttcatttaagttttt |
7890858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 7891030 - 7890992
Alignment:
| Q |
177 |
cattaaggtttaagggtgttcaattagaagatgaatgat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7891030 |
cattaaggtttaagggtgttcaattagaagatgaatgat |
7890992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University