View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9109_high_3 (Length: 291)
Name: NF9109_high_3
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 46222947 - 46223213
Alignment:
| Q |
14 |
tttggtgggtggaagtggaaagggagagaaaagtaagatgaagaagaaattggagtggtgggaatcaatggatgaaggaaagagaaagggtgatttgaaa |
113 |
Q |
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| T |
46222947 |
tttggtgggtggaagtggaaagggagagaaaagtaagatgaagaagaaattggagtggtgggaatcaatggatgaaggaaagagaaagggtgatttgaaa |
46223046 |
T |
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| Q |
114 |
aaagagaagagaagaccagtaagagaatggtggaaggaggagtattctcaagagcttgaaaacaagaacaagaagaagaataataagaaaaagagtgnnn |
213 |
Q |
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| T |
46223047 |
aaagagaagagaagaccagtaagagaatggtggaaggaggagtattctcaagagcttgaaaacaagaacaagaagaagaataataagaaaaagagtgaaa |
46223146 |
T |
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| Q |
214 |
nnnntggtgataactggtggaaatgggagagagatcatgttcatgatcatgatgctggtagtgatgt |
280 |
Q |
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| T |
46223147 |
aaaatggtgataattggtggaaatgggacagagatcatgttcatgatcatgatgctggtagtgatgt |
46223213 |
T |
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