View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9109_low_10 (Length: 294)
Name: NF9109_low_10
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 30199432 - 30199304
Alignment:
| Q |
148 |
agattgagaaccgtacgagatgtggttaagggatggcgtctccggggtttccgattgacggtgggcagtatgctgacggcagcagttgagaacagagaag |
247 |
Q |
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| T |
30199432 |
agattgagaaccgtacgagatgtggttaagggatagcgtctccggggtttccgattgacggtgggcagtatgctgacggcagcagttgagaacagagaag |
30199333 |
T |
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| Q |
248 |
cacaccgaagtgaagtgagactccgaact |
276 |
Q |
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| T |
30199332 |
cacaccgaagtgaagtgagactccgaact |
30199304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 30199572 - 30199464
Alignment:
| Q |
9 |
catcaatgaatacgaattataagcattgaaacagcaaaatattgaggatgctttctatattttaataataaaacagagttcatggtacaatgagtatgag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30199572 |
catcaatgaatacgaattataagcattgaaacagcaaaatattgaggatgctttctatattttaataataaaacagagttcatggtacaatgagtatgag |
30199473 |
T |
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| Q |
109 |
agaatgaag |
117 |
Q |
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| T |
30199472 |
agaatgaag |
30199464 |
T |
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